Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26972 | 3' | -54.4 | NC_005809.1 | + | 36129 | 0.66 | 0.704941 |
Target: 5'- cGgCGACGcCUUCGcgggcGGugGUGUCgCGAg -3' miRNA: 3'- -CgGCUGCuGAAGCa----CCugCACAG-GUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 1708 | 0.66 | 0.704941 |
Target: 5'- cGCCGugGGCcggCGUGccGGCGagggcGUCCAAg -3' miRNA: 3'- -CGGCugCUGaa-GCAC--CUGCa----CAGGUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 25008 | 0.66 | 0.693906 |
Target: 5'- gGCCGACGACagCG-GGuuGccGUCCGAg -3' miRNA: 3'- -CGGCUGCUGaaGCaCCugCa-CAGGUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 20902 | 0.66 | 0.671661 |
Target: 5'- uCUGGCuGACaUCGUGGACGUG-CgCGAg -3' miRNA: 3'- cGGCUG-CUGaAGCACCUGCACaG-GUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 25295 | 0.67 | 0.649261 |
Target: 5'- cGgCGcCGGCUUCGUGGACGgcaauaUCCc- -3' miRNA: 3'- -CgGCuGCUGAAGCACCUGCac----AGGuu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 8128 | 0.67 | 0.626795 |
Target: 5'- gGCCGGCGuuggUUGUGGGCGUG-CgGGu -3' miRNA: 3'- -CGGCUGCuga-AGCACCUGCACaGgUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 5434 | 0.68 | 0.593157 |
Target: 5'- cGCgGAUGGCggCGUGGGCGagGUCgGu -3' miRNA: 3'- -CGgCUGCUGaaGCACCUGCa-CAGgUu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 39126 | 0.69 | 0.505579 |
Target: 5'- aUCGACGACUUCGaGGugGUGg-CAu -3' miRNA: 3'- cGGCUGCUGAAGCaCCugCACagGUu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 26151 | 0.69 | 0.505579 |
Target: 5'- cGCCGGCGAUUacccCGcGGcCGUGUCCu- -3' miRNA: 3'- -CGGCUGCUGAa---GCaCCuGCACAGGuu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 23597 | 0.69 | 0.499215 |
Target: 5'- uGCgCGACuGGCguuacgUCGUccgcaucgccaauguGGACGUGUCCGAa -3' miRNA: 3'- -CG-GCUG-CUGa-----AGCA---------------CCUGCACAGGUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 24166 | 0.7 | 0.484506 |
Target: 5'- cUCGACGGCUgcgCGcuucGGCGUGUCCAu -3' miRNA: 3'- cGGCUGCUGAa--GCac--CUGCACAGGUu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 19052 | 0.7 | 0.433786 |
Target: 5'- cGCCGGCGGCgUCGaucaGCGUGUCCu- -3' miRNA: 3'- -CGGCUGCUGaAGCacc-UGCACAGGuu -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 33779 | 0.73 | 0.309877 |
Target: 5'- cUCGACGACaaccacaagUUCGUGGAgGUGUCgGAa -3' miRNA: 3'- cGGCUGCUG---------AAGCACCUgCACAGgUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 14790 | 0.77 | 0.167829 |
Target: 5'- uGCgCGGCGcgcGCUUCGUGuACGUGUCCGAg -3' miRNA: 3'- -CG-GCUGC---UGAAGCACcUGCACAGGUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 35445 | 0.85 | 0.052705 |
Target: 5'- aGCCGACGACUUCGcGGACGUGagCGGg -3' miRNA: 3'- -CGGCUGCUGAAGCaCCUGCACagGUU- -5' |
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26972 | 3' | -54.4 | NC_005809.1 | + | 34995 | 1.09 | 0.00099 |
Target: 5'- cGCCGACGACUUCGUGGACGUGUCCAAg -3' miRNA: 3'- -CGGCUGCUGAAGCACCUGCACAGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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