miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26973 3' -59.5 NC_005809.1 + 41484 0.66 0.489912
Target:  5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3'
miRNA:   3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5'
26973 3' -59.5 NC_005809.1 + 4041 0.66 0.479964
Target:  5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3'
miRNA:   3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5'
26973 3' -59.5 NC_005809.1 + 7171 0.66 0.470116
Target:  5'- gCCgGgCGCUugucGGAUucggGGGCGACGCUGGGc -3'
miRNA:   3'- -GGgCgGCGA----CCUG----CUUGCUGCGGCUC- -5'
26973 3' -59.5 NC_005809.1 + 37698 0.66 0.470116
Target:  5'- gCCGCCgucgccgcGCUGGGC-AACGACcugaCCGGGc -3'
miRNA:   3'- gGGCGG--------CGACCUGcUUGCUGc---GGCUC- -5'
26973 3' -59.5 NC_005809.1 + 28031 0.66 0.470116
Target:  5'- uCUCGUCGCUGuuguccggcgccGGCG-ACGugGCUGAu -3'
miRNA:   3'- -GGGCGGCGAC------------CUGCuUGCugCGGCUc -5'
26973 3' -59.5 NC_005809.1 + 36409 0.66 0.470116
Target:  5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3'
miRNA:   3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5'
26973 3' -59.5 NC_005809.1 + 24675 0.66 0.460373
Target:  5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3'
miRNA:   3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5'
26973 3' -59.5 NC_005809.1 + 32103 0.66 0.460373
Target:  5'- gCCGgUGCUGcGCGAcuuccaggGCGACGCCaAGg -3'
miRNA:   3'- gGGCgGCGACcUGCU--------UGCUGCGGcUC- -5'
26973 3' -59.5 NC_005809.1 + 11148 0.66 0.450737
Target:  5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3'
miRNA:   3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5'
26973 3' -59.5 NC_005809.1 + 11928 0.66 0.448823
Target:  5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3'
miRNA:   3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5'
26973 3' -59.5 NC_005809.1 + 34641 0.66 0.441213
Target:  5'- gCCGUgGCgugaaGGugGACGCCGAGc -3'
miRNA:   3'- gGGCGgCGaccugCUugCUGCGGCUC- -5'
26973 3' -59.5 NC_005809.1 + 13500 0.66 0.441213
Target:  5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3'
miRNA:   3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5'
26973 3' -59.5 NC_005809.1 + 24442 0.66 0.441213
Target:  5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3'
miRNA:   3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5'
26973 3' -59.5 NC_005809.1 + 17408 0.67 0.431804
Target:  5'- aCCCGCCGacc-ACGAGCGAgGgCCGGu -3'
miRNA:   3'- -GGGCGGCgaccUGCUUGCUgC-GGCUc -5'
26973 3' -59.5 NC_005809.1 + 19466 0.67 0.431804
Target:  5'- aCCGCUGUcgccgUGGGCGccgccguUGGCGUCGGGg -3'
miRNA:   3'- gGGCGGCG-----ACCUGCuu-----GCUGCGGCUC- -5'
26973 3' -59.5 NC_005809.1 + 11233 0.67 0.429004
Target:  5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3'
miRNA:   3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5'
26973 3' -59.5 NC_005809.1 + 26364 0.67 0.422513
Target:  5'- gCUGCUGCUcacgucuucGGGCGAAUGGCGCgUGGc -3'
miRNA:   3'- gGGCGGCGA---------CCUGCUUGCUGCG-GCUc -5'
26973 3' -59.5 NC_005809.1 + 17868 0.67 0.413344
Target:  5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3'
miRNA:   3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5'
26973 3' -59.5 NC_005809.1 + 28281 0.67 0.413344
Target:  5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3'
miRNA:   3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5'
26973 3' -59.5 NC_005809.1 + 4035 0.67 0.413344
Target:  5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3'
miRNA:   3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.