Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26973 | 5' | -54.5 | NC_005809.1 | + | 14017 | 0.66 | 0.636982 |
Target: 5'- gCGCgccgCGAuGGCCG-GCGgccgCAAGGUCg -3' miRNA: 3'- -GCGa---GUU-CCGGUaCGCaga-GUUCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 38179 | 0.66 | 0.636982 |
Target: 5'- aCGCUCAAGGCCcgGCG-Cgac-GG-Cg -3' miRNA: 3'- -GCGAGUUCCGGuaCGCaGaguuCCaG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 35526 | 0.67 | 0.602865 |
Target: 5'- cCGCcCGAGGCCAUGCGccugCUgCAacAGG-Cg -3' miRNA: 3'- -GCGaGUUCCGGUACGCa---GA-GU--UCCaG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 29564 | 0.67 | 0.602865 |
Target: 5'- uGCUCGGGGUaucGCGUC---AGGUCg -3' miRNA: 3'- gCGAGUUCCGguaCGCAGaguUCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 29060 | 0.68 | 0.556677 |
Target: 5'- gGCUCGuAGGCCAUcaGCGggUCAuccucgggcgccgAGGUCa -3' miRNA: 3'- gCGAGU-UCCGGUA--CGCagAGU-------------UCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 2588 | 0.68 | 0.524623 |
Target: 5'- aGCUugCAAGGCCA-GCagGUUggCGAGGUCg -3' miRNA: 3'- gCGA--GUUCCGGUaCG--CAGa-GUUCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 8621 | 0.68 | 0.502929 |
Target: 5'- gCGCuUCucGGCCGcUGCGguggCGAGGUCg -3' miRNA: 3'- -GCG-AGuuCCGGU-ACGCaga-GUUCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 15732 | 0.69 | 0.46079 |
Target: 5'- gGCgCGAGGCCAUGCG-CUCGAc--- -3' miRNA: 3'- gCGaGUUCCGGUACGCaGAGUUccag -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 32319 | 0.7 | 0.419615 |
Target: 5'- cCGCcaUCAAGGCCG-GCGUCcCGacaaccgccgcccAGGUCg -3' miRNA: 3'- -GCG--AGUUCCGGUaCGCAGaGU-------------UCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 31901 | 0.71 | 0.346938 |
Target: 5'- cCGCcaUCGAGGCCGagugccugcgGCGUUUCGAGGg- -3' miRNA: 3'- -GCG--AGUUCCGGUa---------CGCAGAGUUCCag -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 4637 | 0.73 | 0.27568 |
Target: 5'- uGCU--GGGCCAcgcUGCGUCggccaucgcgUCAAGGUCg -3' miRNA: 3'- gCGAguUCCGGU---ACGCAG----------AGUUCCAG- -5' |
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26973 | 5' | -54.5 | NC_005809.1 | + | 35242 | 1.11 | 0.000585 |
Target: 5'- gCGCUCAAGGCCAUGCGUCUCAAGGUCg -3' miRNA: 3'- -GCGAGUUCCGGUACGCAGAGUUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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