miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26974 3' -59.6 NC_005809.1 + 37557 0.66 0.472762
Target:  5'- gCAUCGCggcgcugaaaGCGGacugcGCCGACCUGCuguUCGCc -3'
miRNA:   3'- gGUAGUG----------CGCU-----CGGCUGGGCG---AGCGc -5'
26974 3' -59.6 NC_005809.1 + 10196 0.66 0.472762
Target:  5'- aCGUCAaGCGcacGCCGGCCCGauggUCgGCGg -3'
miRNA:   3'- gGUAGUgCGCu--CGGCUGGGCg---AG-CGC- -5'
26974 3' -59.6 NC_005809.1 + 33732 0.66 0.472762
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5'
26974 3' -59.6 NC_005809.1 + 9528 0.66 0.46687
Target:  5'- gCAUCAUGCugcGGCCcuguucggccagugcGAUCUGCUCGCc -3'
miRNA:   3'- gGUAGUGCGc--UCGG---------------CUGGGCGAGCGc -5'
26974 3' -59.6 NC_005809.1 + 24091 0.66 0.462964
Target:  5'- gUCAUCACgGUGgacgaaucGGCCGACgCCGCcggCGCc -3'
miRNA:   3'- -GGUAGUG-CGC--------UCGGCUG-GGCGa--GCGc -5'
26974 3' -59.6 NC_005809.1 + 13368 0.66 0.453272
Target:  5'- gCCAUgCGCGCGu-CCGACCUGC-CGg- -3'
miRNA:   3'- -GGUA-GUGCGCucGGCUGGGCGaGCgc -5'
26974 3' -59.6 NC_005809.1 + 8220 0.66 0.453272
Target:  5'- gCCAguucgUGCGCG-GCCGugCC-CUCGuCGg -3'
miRNA:   3'- -GGUa----GUGCGCuCGGCugGGcGAGC-GC- -5'
26974 3' -59.6 NC_005809.1 + 18545 0.66 0.452309
Target:  5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3'
miRNA:   3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5'
26974 3' -59.6 NC_005809.1 + 11606 0.66 0.443692
Target:  5'- aCCGUCACGCcgaaguAGUCcGCCaGCUUGCGu -3'
miRNA:   3'- -GGUAGUGCGc-----UCGGcUGGgCGAGCGC- -5'
26974 3' -59.6 NC_005809.1 + 15239 0.66 0.443692
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26974 3' -59.6 NC_005809.1 + 25301 0.66 0.443692
Target:  5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3'
miRNA:   3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5'
26974 3' -59.6 NC_005809.1 + 24004 0.66 0.443692
Target:  5'- gCCGUCAcCGCGAGCgCGGCCUcCaccgaCGUGa -3'
miRNA:   3'- -GGUAGU-GCGCUCG-GCUGGGcGa----GCGC- -5'
26974 3' -59.6 NC_005809.1 + 20039 0.66 0.443692
Target:  5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3'
miRNA:   3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5'
26974 3' -59.6 NC_005809.1 + 1748 0.66 0.443692
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26974 3' -59.6 NC_005809.1 + 12686 0.66 0.434228
Target:  5'- cCUGUCAUGCcgggggggggugGuGCUaGACCCGUUCGCa -3'
miRNA:   3'- -GGUAGUGCG------------CuCGG-CUGGGCGAGCGc -5'
26974 3' -59.6 NC_005809.1 + 19370 0.66 0.434228
Target:  5'- gCCGaauUCAcCGaCGAGgCCGACCUGCugcugUCGCa -3'
miRNA:   3'- -GGU---AGU-GC-GCUC-GGCUGGGCG-----AGCGc -5'
26974 3' -59.6 NC_005809.1 + 36181 0.66 0.434228
Target:  5'- aCUA-CAC-CGGGCCGGCCgGCcUGCGc -3'
miRNA:   3'- -GGUaGUGcGCUCGGCUGGgCGaGCGC- -5'
26974 3' -59.6 NC_005809.1 + 36279 0.66 0.424881
Target:  5'- gCCGUCAauguCGUGGG-CGACCUGUUCGg- -3'
miRNA:   3'- -GGUAGU----GCGCUCgGCUGGGCGAGCgc -5'
26974 3' -59.6 NC_005809.1 + 39312 0.67 0.415655
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26974 3' -59.6 NC_005809.1 + 33784 0.67 0.41474
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.