miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26975 5' -54.8 NC_005809.1 + 216 0.66 0.675074
Target:  5'- aCGGCGAacugGCGCAccucGG-CAuuGGcGCGCUGg -3'
miRNA:   3'- gGUCGCUa---CGCGU----UCaGU--UC-CGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 18823 0.66 0.675074
Target:  5'- cCCGGUG--GCGCcGG-CAuGGCGCUGc -3'
miRNA:   3'- -GGUCGCuaCGCGuUCaGUuCCGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 7132 0.66 0.65253
Target:  5'- cCCAGCGGU-UGCAua--AGGGCGCUc -3'
miRNA:   3'- -GGUCGCUAcGCGUucagUUCCGCGAc -5'
26975 5' -54.8 NC_005809.1 + 14304 0.66 0.65253
Target:  5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3'
miRNA:   3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5'
26975 5' -54.8 NC_005809.1 + 12502 0.66 0.641223
Target:  5'- aCAGUGGcguuuuucaUGaacaGCGcGUCGAGGUGCUGc -3'
miRNA:   3'- gGUCGCU---------ACg---CGUuCAGUUCCGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 3741 0.66 0.641223
Target:  5'- gCCGGUGGUGgGCAcGUCGGuGCcgccGCUGg -3'
miRNA:   3'- -GGUCGCUACgCGUuCAGUUcCG----CGAC- -5'
26975 5' -54.8 NC_005809.1 + 24313 0.66 0.641223
Target:  5'- gUCGGCGAgcaGcCGCGGGUC-AGGCGg-- -3'
miRNA:   3'- -GGUCGCUa--C-GCGUUCAGuUCCGCgac -5'
26975 5' -54.8 NC_005809.1 + 8192 0.66 0.629907
Target:  5'- gCCGGCGAUuucaucGCGCAcggccucguAGUC---GCGCUGg -3'
miRNA:   3'- -GGUCGCUA------CGCGU---------UCAGuucCGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 1724 0.66 0.629907
Target:  5'- gCCGGCGAggGCGUccAAGUCcucgcGGGUGUUa -3'
miRNA:   3'- -GGUCGCUa-CGCG--UUCAGu----UCCGCGAc -5'
26975 5' -54.8 NC_005809.1 + 36791 0.66 0.629907
Target:  5'- gCC-GCGAUG-GCGggacacgauGGUCAAGGCcCUGg -3'
miRNA:   3'- -GGuCGCUACgCGU---------UCAGUUCCGcGAC- -5'
26975 5' -54.8 NC_005809.1 + 19337 0.66 0.618593
Target:  5'- cCCAGCGAgGCGCG-GUCGGuGGC-Cg- -3'
miRNA:   3'- -GGUCGCUaCGCGUuCAGUU-CCGcGac -5'
26975 5' -54.8 NC_005809.1 + 12047 0.67 0.607292
Target:  5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3'
miRNA:   3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5'
26975 5' -54.8 NC_005809.1 + 10864 0.67 0.607292
Target:  5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3'
miRNA:   3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 21691 0.67 0.607292
Target:  5'- gCCAGaaGGUGCGaCAGGUCGAGGU--UGa -3'
miRNA:   3'- -GGUCg-CUACGC-GUUCAGUUCCGcgAC- -5'
26975 5' -54.8 NC_005809.1 + 33589 0.67 0.596013
Target:  5'- cCCcGCGcgGCG-AGGaaaUCGAGGCGCUu -3'
miRNA:   3'- -GGuCGCuaCGCgUUC---AGUUCCGCGAc -5'
26975 5' -54.8 NC_005809.1 + 29954 0.67 0.584766
Target:  5'- gCAGCGAUGC-CGAGcgCGucGGCGCc- -3'
miRNA:   3'- gGUCGCUACGcGUUCa-GUu-CCGCGac -5'
26975 5' -54.8 NC_005809.1 + 16301 0.68 0.540287
Target:  5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3'
miRNA:   3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5'
26975 5' -54.8 NC_005809.1 + 38727 0.68 0.540287
Target:  5'- gCGGCGAggUGCGCAA----AGuGCGCUGg -3'
miRNA:   3'- gGUCGCU--ACGCGUUcaguUC-CGCGAC- -5'
26975 5' -54.8 NC_005809.1 + 9212 0.68 0.529335
Target:  5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3'
miRNA:   3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5'
26975 5' -54.8 NC_005809.1 + 39793 0.68 0.507687
Target:  5'- -gGGCGcaccUGCGCAAcGUCGAGGUGUc- -3'
miRNA:   3'- ggUCGCu---ACGCGUU-CAGUUCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.