miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26976 5' -55.5 NC_005809.1 + 5724 0.66 0.646371
Target:  5'- -uGGGg--GCCUGCACGGUucggcuaaguuugucGGCGAg- -3'
miRNA:   3'- guUCCacaCGGACGUGCUA---------------CCGCUgg -5'
26976 5' -55.5 NC_005809.1 + 4871 0.66 0.641885
Target:  5'- -cAGGUcGuUGCCcaGCGCGGcgacGGCGGCCu -3'
miRNA:   3'- guUCCA-C-ACGGa-CGUGCUa---CCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 9268 0.66 0.640763
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 9124 0.66 0.640763
Target:  5'- --cGGUG-GCCgUGcCGCGAUagccagcGGUGGCCg -3'
miRNA:   3'- guuCCACaCGG-AC-GUGCUA-------CCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 29892 0.66 0.638519
Target:  5'- uCAAGGcGgGCCUcgacacgcgccugcGCAUGAUgGGCGACg -3'
miRNA:   3'- -GUUCCaCaCGGA--------------CGUGCUA-CCGCUGg -5'
26976 5' -55.5 NC_005809.1 + 13471 0.66 0.629544
Target:  5'- --cGGUGUcgggcauGaCCUGgGCGAUGcCGACCg -3'
miRNA:   3'- guuCCACA-------C-GGACgUGCUACcGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 26037 0.66 0.619448
Target:  5'- gCAAGGcG-GCCUGUACGGcuauaucGGCcaGACCa -3'
miRNA:   3'- -GUUCCaCaCGGACGUGCUa------CCG--CUGG- -5'
26976 5' -55.5 NC_005809.1 + 5976 0.66 0.619448
Target:  5'- uCAAGGUGgauucacaccGUCUGCGuCGcucaaaAUGGCGACg -3'
miRNA:   3'- -GUUCCACa---------CGGACGU-GC------UACCGCUGg -5'
26976 5' -55.5 NC_005809.1 + 33901 0.67 0.574789
Target:  5'- cCGAGGUGcGCgCgGCACGcaAUGcCGACCg -3'
miRNA:   3'- -GUUCCACaCG-GaCGUGC--UACcGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 40555 0.67 0.563725
Target:  5'- --cGGUaUGCCgGUGCuGGUGGCGuACCa -3'
miRNA:   3'- guuCCAcACGGaCGUG-CUACCGC-UGG- -5'
26976 5' -55.5 NC_005809.1 + 28137 0.67 0.55162
Target:  5'- -cAGGUuucgcccaacacgGUGCCgcagGCGCGccUGGCGACg -3'
miRNA:   3'- guUCCA-------------CACGGa---CGUGCu-ACCGCUGg -5'
26976 5' -55.5 NC_005809.1 + 34350 0.68 0.509417
Target:  5'- aCGAGGgcacgGCCgcGCACGAacUGGCcGCCa -3'
miRNA:   3'- -GUUCCaca--CGGa-CGUGCU--ACCGcUGG- -5'
26976 5' -55.5 NC_005809.1 + 34651 0.68 0.498809
Target:  5'- gAAGGUGgacGCCgagcGCaACGAgcagcUGGCGAUCu -3'
miRNA:   3'- gUUCCACa--CGGa---CG-UGCU-----ACCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 17464 0.68 0.498809
Target:  5'- -cAGGUGccacgccaggGCCUGCACGAacaGCGGCg -3'
miRNA:   3'- guUCCACa---------CGGACGUGCUac-CGCUGg -5'
26976 5' -55.5 NC_005809.1 + 17199 0.69 0.457426
Target:  5'- aAAGGgcuucugGcGCCUGCcCGGUGGcCGGCUa -3'
miRNA:   3'- gUUCCa------CaCGGACGuGCUACC-GCUGG- -5'
26976 5' -55.5 NC_005809.1 + 32915 0.69 0.438423
Target:  5'- --cGGccacgGCCUGCACGGcugcuguucggccagGGCGACCa -3'
miRNA:   3'- guuCCaca--CGGACGUGCUa--------------CCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 36108 0.69 0.42763
Target:  5'- --cGGcGUGCaguucCUGCGCGAcGGCGACg -3'
miRNA:   3'- guuCCaCACG-----GACGUGCUaCCGCUGg -5'
26976 5' -55.5 NC_005809.1 + 369 0.7 0.38975
Target:  5'- -cGGGUGUgcuugGCCUGC-CGAUugaGcGCGGCCa -3'
miRNA:   3'- guUCCACA-----CGGACGuGCUA---C-CGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 11348 0.73 0.268431
Target:  5'- -cAGGUcuUGCa-GUACGGUGGCGACCu -3'
miRNA:   3'- guUCCAc-ACGgaCGUGCUACCGCUGG- -5'
26976 5' -55.5 NC_005809.1 + 18376 0.76 0.151878
Target:  5'- gCGAGGUuggccuUGCCgaugGCGcCGGUGGCGGCCa -3'
miRNA:   3'- -GUUCCAc-----ACGGa---CGU-GCUACCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.