miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26977 5' -61.2 NC_005809.1 + 42017 0.66 0.330535
Target:  5'- aUGGUCGAGGCG--UGGUuuuucagcGGCCCg- -3'
miRNA:   3'- gACCGGCUCCGCcuACCGu-------UCGGGau -5'
26977 5' -61.2 NC_005809.1 + 8813 0.66 0.322595
Target:  5'- --cGUCGAGGCGGuacuUGGUGucGGCCUUGa -3'
miRNA:   3'- gacCGGCUCCGCCu---ACCGU--UCGGGAU- -5'
26977 5' -61.2 NC_005809.1 + 32468 0.66 0.306389
Target:  5'- aCU-GCCGAGGUGGG-GGCGGccgaugcGCCCg- -3'
miRNA:   3'- -GAcCGGCUCCGCCUaCCGUU-------CGGGau -5'
26977 5' -61.2 NC_005809.1 + 36782 0.66 0.298893
Target:  5'- gCUGGCgcugccgCGAuGGCGGGacacgaUGGUcaAGGCCCUGg -3'
miRNA:   3'- -GACCG-------GCU-CCGCCU------ACCG--UUCGGGAU- -5'
26977 5' -61.2 NC_005809.1 + 4043 0.66 0.285045
Target:  5'- -cGGCCGcGGCGagcGGCAGGCCa-- -3'
miRNA:   3'- gaCCGGCuCCGCcuaCCGUUCGGgau -5'
26977 5' -61.2 NC_005809.1 + 17238 0.67 0.277261
Target:  5'- aCUGGCCGGccuggacaaucccGGCGacgagcgccGGUGGCAGGgCCg- -3'
miRNA:   3'- -GACCGGCU-------------CCGC---------CUACCGUUCgGGau -5'
26977 5' -61.2 NC_005809.1 + 40543 0.67 0.264218
Target:  5'- --cGCCGAGGCGGccGGUAuGCCg-- -3'
miRNA:   3'- gacCGGCUCCGCCuaCCGUuCGGgau -5'
26977 5' -61.2 NC_005809.1 + 10841 0.67 0.251031
Target:  5'- -cGGUCuuGAGGUGGucgaGCAGGCCCUGc -3'
miRNA:   3'- gaCCGG--CUCCGCCuac-CGUUCGGGAU- -5'
26977 5' -61.2 NC_005809.1 + 21243 0.67 0.244644
Target:  5'- cCUGGgCGcGGUGGccGGCAucaAGCCCg- -3'
miRNA:   3'- -GACCgGCuCCGCCuaCCGU---UCGGGau -5'
26977 5' -61.2 NC_005809.1 + 4363 0.68 0.232273
Target:  5'- -cGGCCGgacggcAGGCGGAUGcGC-AGCCa-- -3'
miRNA:   3'- gaCCGGC------UCCGCCUAC-CGuUCGGgau -5'
26977 5' -61.2 NC_005809.1 + 17843 0.68 0.226288
Target:  5'- -aGGCCGcgcAGGCGcGGUGGaagcGGCCCg- -3'
miRNA:   3'- gaCCGGC---UCCGC-CUACCgu--UCGGGau -5'
26977 5' -61.2 NC_005809.1 + 23440 0.69 0.198298
Target:  5'- -cGGCCGGGauGCGGAUGGUucGCgCg- -3'
miRNA:   3'- gaCCGGCUC--CGCCUACCGuuCGgGau -5'
26977 5' -61.2 NC_005809.1 + 35781 0.69 0.18497
Target:  5'- cCUGGCUGAccaGGCGGucauagauucccaggGUGGCGGGCaaaCUAa -3'
miRNA:   3'- -GACCGGCU---CCGCC---------------UACCGUUCGg--GAU- -5'
26977 5' -61.2 NC_005809.1 + 35349 0.7 0.160232
Target:  5'- gUGGCCGAaguugcagGGCuucaucacgcaguccGAUGGCAAGCCCa- -3'
miRNA:   3'- gACCGGCU--------CCGc--------------CUACCGUUCGGGau -5'
26977 5' -61.2 NC_005809.1 + 16245 0.72 0.114617
Target:  5'- -cGGCaCGAuauGGCGGAUGGCGuuGGCCUc- -3'
miRNA:   3'- gaCCG-GCU---CCGCCUACCGU--UCGGGau -5'
26977 5' -61.2 NC_005809.1 + 9837 0.75 0.070701
Target:  5'- uUGGUgGGGGCGGucAUGGCGucAGCCCUc -3'
miRNA:   3'- gACCGgCUCCGCC--UACCGU--UCGGGAu -5'
26977 5' -61.2 NC_005809.1 + 36000 1.06 0.000254
Target:  5'- cCUGGCCGAGGCGGAUGGCAAGCCCUAc -3'
miRNA:   3'- -GACCGGCUCCGCCUACCGUUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.