miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26978 5' -60 NC_005809.1 + 21397 0.66 0.418137
Target:  5'- uGGGCCUGCGCGaGCaUGgAaacgaacuccacGUUcaggucaacgcCCUGCa -3'
miRNA:   3'- -CCCGGACGCGC-CGcACgU------------CAA-----------GGACG- -5'
26978 5' -60 NC_005809.1 + 13459 0.66 0.408876
Target:  5'- cGGCCUcggGCGCGGUGU-CGGgcaugaCCUGg -3'
miRNA:   3'- cCCGGA---CGCGCCGCAcGUCaa----GGACg -5'
26978 5' -60 NC_005809.1 + 34851 0.66 0.399744
Target:  5'- cGGCCgccgaGCGUGcGC-UGCAGUUCaucgGCa -3'
miRNA:   3'- cCCGGa----CGCGC-CGcACGUCAAGga--CG- -5'
26978 5' -60 NC_005809.1 + 7254 0.66 0.399744
Target:  5'- cGGGCCgaUGuCGcCGGCcuuGUGCAGcUUCUcgGCg -3'
miRNA:   3'- -CCCGG--AC-GC-GCCG---CACGUC-AAGGa-CG- -5'
26978 5' -60 NC_005809.1 + 10862 0.66 0.399744
Target:  5'- -aGCCcgcGCGCGGCGggcuggucagGCGGUg-CUGCa -3'
miRNA:   3'- ccCGGa--CGCGCCGCa---------CGUCAagGACG- -5'
26978 5' -60 NC_005809.1 + 17745 0.66 0.390744
Target:  5'- uGGUg-GCGaaaccccaGGUGUGCAGUUCgaGCa -3'
miRNA:   3'- cCCGgaCGCg-------CCGCACGUCAAGgaCG- -5'
26978 5' -60 NC_005809.1 + 15378 0.66 0.381876
Target:  5'- cGGUgaGCGCGuccGCGUGCGGg-CCgGCg -3'
miRNA:   3'- cCCGgaCGCGC---CGCACGUCaaGGaCG- -5'
26978 5' -60 NC_005809.1 + 25829 0.66 0.373145
Target:  5'- cGGGCCgccguugGCGcCGGU---CAGUUCCaUGCu -3'
miRNA:   3'- -CCCGGa------CGC-GCCGcacGUCAAGG-ACG- -5'
26978 5' -60 NC_005809.1 + 18294 0.67 0.347773
Target:  5'- cGGGCCggugGCGaCGGUGUaauagacacgGCAGUagCgGCg -3'
miRNA:   3'- -CCCGGa---CGC-GCCGCA----------CGUCAagGaCG- -5'
26978 5' -60 NC_005809.1 + 28402 0.67 0.347773
Target:  5'- -cGCCggcgGCGCGGCGccaGUAGaugCCUGUc -3'
miRNA:   3'- ccCGGa---CGCGCCGCa--CGUCaa-GGACG- -5'
26978 5' -60 NC_005809.1 + 32921 0.67 0.347773
Target:  5'- cGGCCUGCaCGGC-UGCuGUUCg-GCc -3'
miRNA:   3'- cCCGGACGcGCCGcACGuCAAGgaCG- -5'
26978 5' -60 NC_005809.1 + 1882 0.67 0.347773
Target:  5'- uGGCCgGCGCuggccgggugGGCGaacaGCAGcgggauuuUUCCUGCg -3'
miRNA:   3'- cCCGGaCGCG----------CCGCa---CGUC--------AAGGACG- -5'
26978 5' -60 NC_005809.1 + 10215 0.67 0.339594
Target:  5'- gGGGCCUcgGCGGCGaccGCAGcgaCCUGg -3'
miRNA:   3'- -CCCGGAcgCGCCGCa--CGUCaa-GGACg -5'
26978 5' -60 NC_005809.1 + 448 0.67 0.323658
Target:  5'- uGGGCUgcUGCGCGGCcagcuUGCGGgcgCUGUc -3'
miRNA:   3'- -CCCGG--ACGCGCCGc----ACGUCaagGACG- -5'
26978 5' -60 NC_005809.1 + 13454 0.67 0.323658
Target:  5'- cGGCCUcGCGCGcGUGaccgGCAGcaagUCCcGCa -3'
miRNA:   3'- cCCGGA-CGCGC-CGCa---CGUCa---AGGaCG- -5'
26978 5' -60 NC_005809.1 + 26046 0.68 0.308286
Target:  5'- -aGCCcGCGCGGCGgGCGcGcUCCaUGCg -3'
miRNA:   3'- ccCGGaCGCGCCGCaCGU-CaAGG-ACG- -5'
26978 5' -60 NC_005809.1 + 938 0.68 0.292752
Target:  5'- gGGGCCgaucuguccguccUGCGCGGUGcccacgGCAG--CUUGCa -3'
miRNA:   3'- -CCCGG-------------ACGCGCCGCa-----CGUCaaGGACG- -5'
26978 5' -60 NC_005809.1 + 14786 0.68 0.286284
Target:  5'- cGG-CUGCGCGGCGcGCGcUUCgUGUa -3'
miRNA:   3'- cCCgGACGCGCCGCaCGUcAAGgACG- -5'
26978 5' -60 NC_005809.1 + 21179 0.69 0.2589
Target:  5'- cGGCCugcUGCGCGGCcUGCuGcuggUCUGCg -3'
miRNA:   3'- cCCGG---ACGCGCCGcACGuCaa--GGACG- -5'
26978 5' -60 NC_005809.1 + 35351 0.69 0.2589
Target:  5'- aGGGUgaGCGCGGC--GCAGaUgCUGCc -3'
miRNA:   3'- -CCCGgaCGCGCCGcaCGUCaAgGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.