Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 10204 | 0.66 | 0.364576 |
|
Target: 5'- gCUGGGcGGccgGGGCCUCGGCGgcgaCCgCAGCg -3' miRNA: 3'- -GGCCU-CUa--UUCGGGGCCGCg---GG-GUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 19032 | 0.66 | 0.364576 |
|
Target: 5'- gCGGu----AGCCCUGGUagcgGCCgCCGGCg -3' miRNA: 3'- gGCCucuauUCGGGGCCG----CGG-GGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 13213 | 0.66 | 0.367949 |
|
Target: 5'- gCUGGGGcaAGGCCaCCGGCGCgUgguucgaggacuuggCCGGCg -3' miRNA: 3'- -GGCCUCuaUUCGG-GGCCGCG-G---------------GGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 31209 | 0.66 | 0.386879 |
|
Target: 5'- aCGGucGAgggcgaaagcaugAAGaaCCCCGGCGCgcggCCCAGCu -3' miRNA: 3'- gGCCu-CUa------------UUC--GGGGCCGCG----GGGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 41873 | 0.66 | 0.390389 |
|
Target: 5'- cCUGGGcGGUAucuugggcGGCCcggCCGGCGCCgCCguaGGCg -3' miRNA: 3'- -GGCCU-CUAU--------UCGG---GGCCGCGG-GG---UCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 15939 | 0.66 | 0.390389 |
|
Target: 5'- ----cGAUAGGCUgCGGCGCCUUcGCg -3' miRNA: 3'- ggccuCUAUUCGGgGCCGCGGGGuCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 12100 | 0.66 | 0.399255 |
|
Target: 5'- -aGcAGGUGAcGCgaugaCCGGCGCCCCcuGGCa -3' miRNA: 3'- ggCcUCUAUU-CGg----GGCCGCGGGG--UCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 13488 | 0.66 | 0.399255 |
|
Target: 5'- aCGGGccUGA-CCUCGGCGCCCgAGg -3' miRNA: 3'- gGCCUcuAUUcGGGGCCGCGGGgUCg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home