Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 6739 | 0.7 | 0.201616 |
|
Target: 5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3' miRNA: 3'- gGCCuCuauUCGGggCCGCGGGGUcg -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 32363 | 0.72 | 0.153985 |
|
Target: 5'- gCGGucgccgccgAGGCCCCGGC-CgCCCAGCa -3' miRNA: 3'- gGCCucua-----UUCGGGGCCGcG-GGGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 3483 | 0.72 | 0.150716 |
|
Target: 5'- gCUGGAGuucgacGgCCCGGCGUUCCAGUa -3' miRNA: 3'- -GGCCUCuauu--CgGGGCCGCGGGGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 36800 | 0.72 | 0.146718 |
|
Target: 5'- gCGGGacacGAUGgucaaGGCCCUGGCGCacucgcugCCCGGCg -3' miRNA: 3'- gGCCU----CUAU-----UCGGGGCCGCG--------GGGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 12479 | 0.73 | 0.124701 |
|
Target: 5'- gCCuGGGAcaaGGGCCgUGGCGCCCgGGCg -3' miRNA: 3'- -GGcCUCUa--UUCGGgGCCGCGGGgUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 27439 | 0.74 | 0.108736 |
|
Target: 5'- cCCGGcGGccgcAGGCCCUGGCGCUgguaugCCAGCg -3' miRNA: 3'- -GGCCuCUa---UUCGGGGCCGCGG------GGUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 17269 | 0.76 | 0.075761 |
|
Target: 5'- gCCGGGGAUAuuGCCguccacgaagCCGGCGCCgCgGGCg -3' miRNA: 3'- -GGCCUCUAUu-CGG----------GGCCGCGG-GgUCG- -5' |
|||||||
| 26979 | 3' | -60.8 | NC_005809.1 | + | 36281 | 1.12 | 0.00014 |
|
Target: 5'- aCCGGAGAUAAGCCCCGGCGCCCCAGCc -3' miRNA: 3'- -GGCCUCUAUUCGGGGCCGCGGGGUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home