Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26979 | 3' | -60.8 | NC_005809.1 | + | 10204 | 0.66 | 0.364576 |
Target: 5'- gCUGGGcGGccgGGGCCUCGGCGgcgaCCgCAGCg -3' miRNA: 3'- -GGCCU-CUa--UUCGGGGCCGCg---GG-GUCG- -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 8869 | 0.67 | 0.332038 |
Target: 5'- aCGGugcGGUAgcguucGGCCuuGGCGUCCCAc- -3' miRNA: 3'- gGCCu--CUAU------UCGGggCCGCGGGGUcg -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 7771 | 0.7 | 0.217328 |
Target: 5'- aCCGGcgcGAUcuGCgCCGGCGUccacccuucgccgCCCAGCa -3' miRNA: 3'- -GGCCu--CUAuuCGgGGCCGCG-------------GGGUCG- -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 6739 | 0.7 | 0.201616 |
Target: 5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3' miRNA: 3'- gGCCuCuauUCGGggCCGCGGGGUcg -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 3741 | 0.68 | 0.280354 |
Target: 5'- gCCGGuGGUGGGCacgUCGGUGCCgCC-GCu -3' miRNA: 3'- -GGCCuCUAUUCGg--GGCCGCGG-GGuCG- -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 3483 | 0.72 | 0.150716 |
Target: 5'- gCUGGAGuucgacGgCCCGGCGUUCCAGUa -3' miRNA: 3'- -GGCCUCuauu--CgGGGCCGCGGGGUCG- -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 2727 | 0.67 | 0.324244 |
Target: 5'- gCCGGAcgcuUGAGCgcggCCCGGCGCUgCucgGGCg -3' miRNA: 3'- -GGCCUcu--AUUCG----GGGCCGCGGgG---UCG- -5' |
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26979 | 3' | -60.8 | NC_005809.1 | + | 167 | 0.67 | 0.324244 |
Target: 5'- -aGGcGGAUGcGCCCCGGUGUCgCugGGCa -3' miRNA: 3'- ggCC-UCUAUuCGGGGCCGCGGgG--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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