miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26979 5' -52.9 NC_005809.1 + 14535 0.66 0.778778
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5'
26979 5' -52.9 NC_005809.1 + 35547 0.66 0.778778
Target:  5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3'
miRNA:   3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5'
26979 5' -52.9 NC_005809.1 + 38693 0.66 0.778778
Target:  5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3'
miRNA:   3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 33072 0.66 0.77774
Target:  5'- uCAUCGGGucgcgcaGCGACGCgGcGGCCUACa -3'
miRNA:   3'- uGUGGCUC-------UGUUGCGgUaCUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 17267 0.66 0.76832
Target:  5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3'
miRNA:   3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5'
26979 5' -52.9 NC_005809.1 + 39118 0.66 0.76832
Target:  5'- aACAUCGGGGCGcgcgGCGUCuGUGACCa--- -3'
miRNA:   3'- -UGUGGCUCUGU----UGCGG-UACUGGauga -5'
26979 5' -52.9 NC_005809.1 + 7933 0.66 0.767265
Target:  5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3'
miRNA:   3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5'
26979 5' -52.9 NC_005809.1 + 32508 0.66 0.75771
Target:  5'- uCGCCccGACGACGCCucgGACgCUAUUg -3'
miRNA:   3'- uGUGGcuCUGUUGCGGua-CUG-GAUGA- -5'
26979 5' -52.9 NC_005809.1 + 14374 0.66 0.75771
Target:  5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3'
miRNA:   3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5'
26979 5' -52.9 NC_005809.1 + 8444 0.66 0.75771
Target:  5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 13830 0.66 0.75771
Target:  5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5'
26979 5' -52.9 NC_005809.1 + 35963 0.66 0.75771
Target:  5'- gGCGgCG-GACuACGCCAUGcUCUACg -3'
miRNA:   3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 28932 0.66 0.75771
Target:  5'- gACAU--GGACGGCGCgCcgGACUUGCUg -3'
miRNA:   3'- -UGUGgcUCUGUUGCG-GuaCUGGAUGA- -5'
26979 5' -52.9 NC_005809.1 + 24466 0.66 0.746962
Target:  5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3'
miRNA:   3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 34658 0.66 0.746962
Target:  5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3'
miRNA:   3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 29125 0.66 0.746961
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 40523 0.66 0.745879
Target:  5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3'
miRNA:   3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5'
26979 5' -52.9 NC_005809.1 + 15064 0.66 0.736087
Target:  5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3'
miRNA:   3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5'
26979 5' -52.9 NC_005809.1 + 41954 0.66 0.736087
Target:  5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3'
miRNA:   3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5'
26979 5' -52.9 NC_005809.1 + 35747 0.67 0.725099
Target:  5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3'
miRNA:   3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.