Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2698 | 3' | -55.1 | NC_001491.2 | + | 44444 | 0.66 | 0.94378 |
Target: 5'- gGCGGCcuugaaGUGGauuGGGGCaGAGGGGGaGCGg -3' miRNA: 3'- -UGCUGua----CACU---CCUUG-CUUCCCC-CGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 138094 | 0.78 | 0.327913 |
Target: 5'- uGCGGCGaagGUGGGGGccaagACGAGGuGGGGCGg -3' miRNA: 3'- -UGCUGUa--CACUCCU-----UGCUUC-CCCCGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 31981 | 0.74 | 0.559815 |
Target: 5'- aGCGcCAUcaGAGGAACGGAGGGaGCGg -3' miRNA: 3'- -UGCuGUAcaCUCCUUGCUUCCCcCGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 54604 | 0.7 | 0.780321 |
Target: 5'- gGCGGCAgcgGcGGGGGAUGGu-GGGGCGg -3' miRNA: 3'- -UGCUGUa--CaCUCCUUGCUucCCCCGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 121499 | 0.69 | 0.8163 |
Target: 5'- gGCGAgGggGUcAGGGACGGgaugAGGGGGCu -3' miRNA: 3'- -UGCUgUa-CAcUCCUUGCU----UCCCCCGc -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 119464 | 0.68 | 0.840736 |
Target: 5'- aACGACAcacggguucuaauUGguuGGAGCGggGGGGagGCGa -3' miRNA: 3'- -UGCUGU-------------ACacuCCUUGCuuCCCC--CGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 142570 | 0.68 | 0.872515 |
Target: 5'- cAUGGCuggguuacgGUGUGcGGcuAugGggGGGGGCGc -3' miRNA: 3'- -UGCUG---------UACACuCC--UugCuuCCCCCGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 80755 | 0.67 | 0.893489 |
Target: 5'- cCGAaaaaGUGGGGAACu--GGGGGCa -3' miRNA: 3'- uGCUgua-CACUCCUUGcuuCCCCCGc -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 142622 | 0.66 | 0.918227 |
Target: 5'- cACGGuuauUGAGGGugGggGgGGGGCa -3' miRNA: 3'- -UGCUguacACUCCUugCuuC-CCCCGc -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 140259 | 0.66 | 0.93124 |
Target: 5'- gACGGCGaG-GAguccgagcggggacgGGGACGggGGcGGGCGc -3' miRNA: 3'- -UGCUGUaCaCU---------------CCUUGCuuCC-CCCGC- -5' |
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2698 | 3' | -55.1 | NC_001491.2 | + | 114000 | 1.08 | 0.004092 |
Target: 5'- gACGACAUGUGAGGAACGAAGGGGGCGu -3' miRNA: 3'- -UGCUGUACACUCCUUGCUUCCCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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