Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 36763 | 1.11 | 0.000213 |
Target: 5'- aCGCCAUGCCCGACUAUCCGCUGGCGCu -3' miRNA: 3'- -GCGGUACGGGCUGAUAGGCGACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 12724 | 0.75 | 0.120071 |
Target: 5'- uCGCCcgGCCCGuugguGCUGggugCCGCgcccagacgcuUGGCGCg -3' miRNA: 3'- -GCGGuaCGGGC-----UGAUa---GGCG-----------ACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 6352 | 0.74 | 0.145756 |
Target: 5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3' miRNA: 3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 28868 | 0.74 | 0.145756 |
Target: 5'- gCGCCGcGCCaCGucCUcgCUGCUGGCGUa -3' miRNA: 3'- -GCGGUaCGG-GCu-GAuaGGCGACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 11579 | 0.72 | 0.181173 |
Target: 5'- aGCCAUGCcgcccagggccgCCGGCUggCCGCcgGGCaGCa -3' miRNA: 3'- gCGGUACG------------GGCUGAuaGGCGa-CCG-CG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 15135 | 0.72 | 0.181173 |
Target: 5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3' miRNA: 3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 29110 | 0.71 | 0.21255 |
Target: 5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3' miRNA: 3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 41955 | 0.71 | 0.21255 |
Target: 5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3' miRNA: 3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 35161 | 0.71 | 0.21255 |
Target: 5'- gGCCAuccggUGCCCGGCUucaaGCUGGUGg -3' miRNA: 3'- gCGGU-----ACGGGCUGAuaggCGACCGCg -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 26116 | 0.71 | 0.218214 |
Target: 5'- gCGCCAUG-CCGGCaugUGUUCGUcgcggcagauuUGGCGCa -3' miRNA: 3'- -GCGGUACgGGCUG---AUAGGCG-----------ACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 36658 | 0.71 | 0.224005 |
Target: 5'- cCGCCAgcggcgaaaagaUGCCgGACgAUCUGCggugGGCGUu -3' miRNA: 3'- -GCGGU------------ACGGgCUGaUAGGCGa---CCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 9368 | 0.71 | 0.224591 |
Target: 5'- gGCCGUGCCgGAUUcgCCaGCgguggccgugccgagGGCGCc -3' miRNA: 3'- gCGGUACGGgCUGAuaGG-CGa--------------CCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 18899 | 0.7 | 0.242166 |
Target: 5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3' miRNA: 3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 12966 | 0.7 | 0.242166 |
Target: 5'- gCGCCcgGCCUGgacaACUGgcaaaCCGCgcgccugGGCGCg -3' miRNA: 3'- -GCGGuaCGGGC----UGAUa----GGCGa------CCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 14875 | 0.7 | 0.248487 |
Target: 5'- gCGCCuuuaaguUGCCCGGCUuucaggGUCUGCgcGGCGa -3' miRNA: 3'- -GCGGu------ACGGGCUGA------UAGGCGa-CCGCg -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 27422 | 0.7 | 0.253641 |
Target: 5'- gCGCCuggcgcaccgcGCCCGGCgg-CCGCaggcccUGGCGCu -3' miRNA: 3'- -GCGGua---------CGGGCUGauaGGCG------ACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 37886 | 0.7 | 0.261537 |
Target: 5'- gGCCAUucucGCCgCG-CUAUCCggcgcGCUGGUGCc -3' miRNA: 3'- gCGGUA----CGG-GCuGAUAGG-----CGACCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 15121 | 0.7 | 0.261537 |
Target: 5'- uGCCuaccagGCCCGACcccaUGCUGGCGg -3' miRNA: 3'- gCGGua----CGGGCUGauagGCGACCGCg -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 29558 | 0.7 | 0.264213 |
Target: 5'- aCGCCGUGCUCGGgguaucgcgucagguCgg-CCGCgcccaGGCGCg -3' miRNA: 3'- -GCGGUACGGGCU---------------GauaGGCGa----CCGCG- -5' |
|||||||
26980 | 3' | -58.8 | NC_005809.1 | + | 35069 | 0.7 | 0.27514 |
Target: 5'- aCGCCAUcCUCGGCaacCUGCUgGGCGCg -3' miRNA: 3'- -GCGGUAcGGGCUGauaGGCGA-CCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home