miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26980 5' -59.1 NC_005809.1 + 24650 0.66 0.42534
Target:  5'- cGGCGGGcCAgGAUGGUguugucGcGCCCg -3'
miRNA:   3'- aCCGCCCuGUgCUACCAguu---C-CGGGa -5'
26980 5' -59.1 NC_005809.1 + 28327 0.66 0.415904
Target:  5'- cGGCGucGGACuCGAUGGcCuuGGCCUc -3'
miRNA:   3'- aCCGC--CCUGuGCUACCaGuuCCGGGa -5'
26980 5' -59.1 NC_005809.1 + 11389 0.67 0.388381
Target:  5'- cGGUGGcGACcUGAUGGgcCAGGGUCUUg -3'
miRNA:   3'- aCCGCC-CUGuGCUACCa-GUUCCGGGA- -5'
26980 5' -59.1 NC_005809.1 + 7858 0.67 0.35024
Target:  5'- aGGCGGGcuucGCGguucaggcuucggcCGAUGGUCGGGaaaugcuGCCCUu -3'
miRNA:   3'- aCCGCCC----UGU--------------GCUACCAGUUC-------CGGGA- -5'
26980 5' -59.1 NC_005809.1 + 38156 0.68 0.324219
Target:  5'- cUGGCGcGGCACGAucUGGugaaaacggcuuucaUCAAGGCCg- -3'
miRNA:   3'- -ACCGCcCUGUGCU--ACC---------------AGUUCCGGga -5'
26980 5' -59.1 NC_005809.1 + 19344 0.68 0.321069
Target:  5'- aGGCGcGGu--CGGUGGcCGAGGCCg- -3'
miRNA:   3'- aCCGC-CCuguGCUACCaGUUCCGGga -5'
26980 5' -59.1 NC_005809.1 + 7796 0.69 0.2815
Target:  5'- aGGCGauGGGCAUGucccacucgcugauAUGGUCGAGGCgCg -3'
miRNA:   3'- aCCGC--CCUGUGC--------------UACCAGUUCCGgGa -5'
26980 5' -59.1 NC_005809.1 + 8579 0.69 0.269654
Target:  5'- aGGCGcGACACGAcGGUCAcGGCgaCCg -3'
miRNA:   3'- aCCGCcCUGUGCUaCCAGUuCCG--GGa -5'
26980 5' -59.1 NC_005809.1 + 23535 0.69 0.262875
Target:  5'- aGGCGGcGCACGc-GGUCGAuGGCCUc -3'
miRNA:   3'- aCCGCCcUGUGCuaCCAGUU-CCGGGa -5'
26980 5' -59.1 NC_005809.1 + 22769 0.71 0.219252
Target:  5'- gGGUGaGGGC-CGAuUGGUCAAcGCCCUg -3'
miRNA:   3'- aCCGC-CCUGuGCU-ACCAGUUcCGGGA- -5'
26980 5' -59.1 NC_005809.1 + 22491 0.71 0.219252
Target:  5'- gGGCGGG-CugGGcUGGUCAu-GCCCg -3'
miRNA:   3'- aCCGCCCuGugCU-ACCAGUucCGGGa -5'
26980 5' -59.1 NC_005809.1 + 36797 1.08 0.000338
Target:  5'- aUGGCGGGACACGAUGGUCAAGGCCCUg -3'
miRNA:   3'- -ACCGCCCUGUGCUACCAGUUCCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.