miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 3' -57.2 NC_005809.1 + 6614 0.67 0.461146
Target:  5'- -aGCAuGgCGUaGUCC-GCCGCCAGCu -3'
miRNA:   3'- gaCGUuUgGCG-CAGGuCGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 29114 0.67 0.461146
Target:  5'- aUGCccgacACCGCGcCCgaGGCCGCCAaGCu -3'
miRNA:   3'- gACGuu---UGGCGCaGG--UCGGUGGU-CGu -5'
26981 3' -57.2 NC_005809.1 + 26440 0.67 0.451058
Target:  5'- gUGC-GGCCGCaGUCCuacgucggGGCCACCGacguGCAg -3'
miRNA:   3'- gACGuUUGGCG-CAGG--------UCGGUGGU----CGU- -5'
26981 3' -57.2 NC_005809.1 + 17264 0.67 0.451058
Target:  5'- -gGCAAGCCGgggauauugcCGUCCAcgaagccggcGCCGCgGGCGc -3'
miRNA:   3'- gaCGUUUGGC----------GCAGGU----------CGGUGgUCGU- -5'
26981 3' -57.2 NC_005809.1 + 23044 0.67 0.441093
Target:  5'- gCUGCGcGCUGCGUUguGCCuuuuCCuGCu -3'
miRNA:   3'- -GACGUuUGGCGCAGguCGGu---GGuCGu -5'
26981 3' -57.2 NC_005809.1 + 40535 0.67 0.441093
Target:  5'- uUGCGcGCCGUGUUCuaucGCCugcgcgacuucGCCAGCGa -3'
miRNA:   3'- gACGUuUGGCGCAGGu---CGG-----------UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9364 0.67 0.441093
Target:  5'- -nGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 20227 0.67 0.438128
Target:  5'- gCUGCAcuccauguacgaagAACucggCGCGUUCGGCacgGCCAGCAg -3'
miRNA:   3'- -GACGU--------------UUG----GCGCAGGUCGg--UGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 42103 0.67 0.435174
Target:  5'- -gGCAuccGACCGCGacagcgcccgcaagCUGGCCGCgCAGCAg -3'
miRNA:   3'- gaCGU---UUGGCGCa-------------GGUCGGUG-GUCGU- -5'
26981 3' -57.2 NC_005809.1 + 30976 0.67 0.421544
Target:  5'- aCUGCu-GCCcgGCGgCCAGCCGgCGGCc -3'
miRNA:   3'- -GACGuuUGG--CGCaGGUCGGUgGUCGu -5'
26981 3' -57.2 NC_005809.1 + 7385 0.67 0.421544
Target:  5'- -gGCGGgcACCGCGgcgaCCuuCCACCAGCu -3'
miRNA:   3'- gaCGUU--UGGCGCa---GGucGGUGGUCGu -5'
26981 3' -57.2 NC_005809.1 + 22245 0.67 0.419617
Target:  5'- uUGUcgGCCGCGauggcguauucgCCGGCCGUCAGCGa -3'
miRNA:   3'- gACGuuUGGCGCa-----------GGUCGGUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 10520 0.68 0.411967
Target:  5'- aCUGCuGACCGCcggCCAcgcuuuccGCCGCCAcGCGc -3'
miRNA:   3'- -GACGuUUGGCGca-GGU--------CGGUGGU-CGU- -5'
26981 3' -57.2 NC_005809.1 + 9292 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9244 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9004 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9148 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9100 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9340 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5'
26981 3' -57.2 NC_005809.1 + 9196 0.68 0.411967
Target:  5'- -cGguGGCCGUG-CCGGauuCGCCAGCGg -3'
miRNA:   3'- gaCguUUGGCGCaGGUCg--GUGGUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.