miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26981 5' -60.1 NC_005809.1 + 25631 0.66 0.410532
Target:  5'- gGCGgCACGCuGCuGGACGgCGCCgUGCc -3'
miRNA:   3'- gCGCgGUGCG-CGcUUUGC-GUGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 29974 0.66 0.410532
Target:  5'- gGCGCCAUGCGCaaauucaucGACGgcuauuucauCGCCgCGCa -3'
miRNA:   3'- gCGCGGUGCGCGcu-------UUGC----------GUGGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 17697 0.66 0.410532
Target:  5'- aGCGCCACucgggcCGgGAAAUGC-CCaUCGCg -3'
miRNA:   3'- gCGCGGUGc-----GCgCUUUGCGuGG-GGCG- -5'
26981 5' -60.1 NC_005809.1 + 31067 0.66 0.410532
Target:  5'- -aCGCCA-GCGC-AGGCGCugCCCuuuGCg -3'
miRNA:   3'- gcGCGGUgCGCGcUUUGCGugGGG---CG- -5'
26981 5' -60.1 NC_005809.1 + 966 0.66 0.405087
Target:  5'- uCGaGCCACGUGuCGAgccAGCccuucaccgucgcccGCugCCCGCg -3'
miRNA:   3'- -GCgCGGUGCGC-GCU---UUG---------------CGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 33250 0.66 0.401483
Target:  5'- cCGCccGCCGCGC-CGAcgUGCGCCgCCa- -3'
miRNA:   3'- -GCG--CGGUGCGcGCUuuGCGUGG-GGcg -5'
26981 5' -60.1 NC_005809.1 + 27719 0.66 0.401483
Target:  5'- gGCGCCcaGCGUGCG--GCGCuggCCGCc -3'
miRNA:   3'- gCGCGG--UGCGCGCuuUGCGuggGGCG- -5'
26981 5' -60.1 NC_005809.1 + 3688 0.66 0.401483
Target:  5'- uGCGaauccaCCACG-GCGAcGCGCugCCCcauGCg -3'
miRNA:   3'- gCGC------GGUGCgCGCUuUGCGugGGG---CG- -5'
26981 5' -60.1 NC_005809.1 + 29617 0.66 0.401483
Target:  5'- gGUGuCCAuuCGCGCGAA---CAUCCCGCc -3'
miRNA:   3'- gCGC-GGU--GCGCGCUUugcGUGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 18082 0.66 0.401483
Target:  5'- uGgGCCGCcgaagccgGCGCGAaccagGACGC-CUUCGCg -3'
miRNA:   3'- gCgCGGUG--------CGCGCU-----UUGCGuGGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 4517 0.66 0.401483
Target:  5'- gGCGCCcgugaacgugGCGUGCuGGGcgguCGUGCCgCCGCg -3'
miRNA:   3'- gCGCGG----------UGCGCG-CUUu---GCGUGG-GGCG- -5'
26981 5' -60.1 NC_005809.1 + 33898 0.66 0.401483
Target:  5'- -aCGCCgagguGCGCGCGgcACGCaauGCCgaCCGCc -3'
miRNA:   3'- gcGCGG-----UGCGCGCuuUGCG---UGG--GGCG- -5'
26981 5' -60.1 NC_005809.1 + 36818 0.66 0.392561
Target:  5'- gGC-CCugGCGCacu-CGCugCCCGg -3'
miRNA:   3'- gCGcGGugCGCGcuuuGCGugGGGCg -5'
26981 5' -60.1 NC_005809.1 + 40338 0.66 0.392561
Target:  5'- gCGCgGCCACGCGCcgccUGCugCgCGUg -3'
miRNA:   3'- -GCG-CGGUGCGCGcuuuGCGugGgGCG- -5'
26981 5' -60.1 NC_005809.1 + 24148 0.66 0.390792
Target:  5'- gCGCGCCugGCccaGCGccucgacggcuGCGCGCUUCGg -3'
miRNA:   3'- -GCGCGGugCG---CGCuu---------UGCGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 12119 0.67 0.38727
Target:  5'- gGCGCCcCcuggcaacugauucaGgGCGAGGCcCugCCCGCg -3'
miRNA:   3'- gCGCGGuG---------------CgCGCUUUGcGugGGGCG- -5'
26981 5' -60.1 NC_005809.1 + 32756 0.67 0.383769
Target:  5'- aGCGUgAUGCGC-AAACGCugCuuGa -3'
miRNA:   3'- gCGCGgUGCGCGcUUUGCGugGggCg -5'
26981 5' -60.1 NC_005809.1 + 24671 0.67 0.383769
Target:  5'- uCGCGCC-CGcCGCGGGccACGUccacGCCCagGCu -3'
miRNA:   3'- -GCGCGGuGC-GCGCUU--UGCG----UGGGg-CG- -5'
26981 5' -60.1 NC_005809.1 + 40919 0.67 0.383769
Target:  5'- aCGCGCaaacaggACGCGC-AGACcUACCCCGa -3'
miRNA:   3'- -GCGCGg------UGCGCGcUUUGcGUGGGGCg -5'
26981 5' -60.1 NC_005809.1 + 17595 0.67 0.375109
Target:  5'- uGUGCUgguggguggGCGCGuCGAGuACGacuucgACCCCGCg -3'
miRNA:   3'- gCGCGG---------UGCGC-GCUU-UGCg-----UGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.