miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 5' -57.1 NC_005809.1 + 616 0.67 0.509017
Target:  5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3'
miRNA:   3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5'
26982 5' -57.1 NC_005809.1 + 688 0.66 0.573348
Target:  5'- -cGG-CGGcGCCGGCCgggcCGCCCAagauacCGCc -3'
miRNA:   3'- uaCCaGCUaUGGCUGGa---GCGGGU------GCG- -5'
26982 5' -57.1 NC_005809.1 + 1756 0.72 0.232076
Target:  5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3'
miRNA:   3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5'
26982 5' -57.1 NC_005809.1 + 3637 0.69 0.397492
Target:  5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3'
miRNA:   3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 4255 0.71 0.271085
Target:  5'- --aGUCGGUGCCGGCCgucagCGCCgGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGa----GCGGgUGcg -5'
26982 5' -57.1 NC_005809.1 + 5196 0.7 0.315198
Target:  5'- --cGUCGAUauuGCCGGCUaccgUGCCCACGUc -3'
miRNA:   3'- uacCAGCUA---UGGCUGGa---GCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 5454 0.7 0.307484
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5'
26982 5' -57.1 NC_005809.1 + 6266 0.67 0.502741
Target:  5'- -cGGUUGAUcugcgcgcugggcagGCCGAacaggUCGCCCACGa -3'
miRNA:   3'- uaCCAGCUA---------------UGGCUgg---AGCGGGUGCg -5'
26982 5' -57.1 NC_005809.1 + 7069 0.66 0.573348
Target:  5'- -aGGUacuucaUGAcGCCGcgGCCUacccacggcgCGCCCACGCg -3'
miRNA:   3'- uaCCA------GCUaUGGC--UGGA----------GCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 7626 0.67 0.509017
Target:  5'- gAUGGUCaGGggGCgCGG-CUCGaCCCACGCc -3'
miRNA:   3'- -UACCAG-CUa-UG-GCUgGAGC-GGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 7823 0.67 0.497537
Target:  5'- uAUGGUCGAggcgcgGCUgcacgauGACCagGCgCACGCg -3'
miRNA:   3'- -UACCAGCUa-----UGG-------CUGGagCGgGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 8375 0.74 0.177632
Target:  5'- -cGGcUCGAacCCGGCCUCGCgCugGCu -3'
miRNA:   3'- uaCC-AGCUauGGCUGGAGCGgGugCG- -5'
26982 5' -57.1 NC_005809.1 + 8509 0.66 0.530167
Target:  5'- --cGUCGAUGCCcuuGAUgUCGCCgGCGa -3'
miRNA:   3'- uacCAGCUAUGG---CUGgAGCGGgUGCg -5'
26982 5' -57.1 NC_005809.1 + 8639 0.67 0.498576
Target:  5'- gGUGG-CGAggucGCCGGCCUUcaUCGCGCg -3'
miRNA:   3'- -UACCaGCUa---UGGCUGGAGcgGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 8834 0.76 0.123974
Target:  5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3'
miRNA:   3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5'
26982 5' -57.1 NC_005809.1 + 10000 0.69 0.364521
Target:  5'- -gGGUCGAaagUGCCGcgcgcccgGCCccCGCCCugGUa -3'
miRNA:   3'- uaCCAGCU---AUGGC--------UGGa-GCGGGugCG- -5'
26982 5' -57.1 NC_005809.1 + 10111 0.69 0.391109
Target:  5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3'
miRNA:   3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 10512 0.66 0.51955
Target:  5'- uUGaUCGAacUGCUGACCgcCGgCCACGCu -3'
miRNA:   3'- uACcAGCU--AUGGCUGGa-GCgGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 10850 0.67 0.457828
Target:  5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3'
miRNA:   3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5'
26982 5' -57.1 NC_005809.1 + 11205 0.68 0.409523
Target:  5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3'
miRNA:   3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.