miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 5' -57.1 NC_005809.1 + 21465 0.67 0.498576
Target:  5'- -cGGcagGAUGuuGGCCUCGaCCAUGCg -3'
miRNA:   3'- uaCCag-CUAUggCUGGAGCgGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 7823 0.67 0.497537
Target:  5'- uAUGGUCGAggcgcgGCUgcacgauGACCagGCgCACGCg -3'
miRNA:   3'- -UACCAGCUa-----UGG-------CUGGagCGgGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 31475 0.67 0.488231
Target:  5'- uUGGcCGcaGCCGACaaggUGCUCGCGCg -3'
miRNA:   3'- uACCaGCuaUGGCUGga--GCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 24128 0.67 0.488231
Target:  5'- -gGGUCGuaguccaGCCGGCUgCGCgCCugGCc -3'
miRNA:   3'- uaCCAGCua-----UGGCUGGaGCG-GGugCG- -5'
26982 5' -57.1 NC_005809.1 + 15537 0.67 0.488231
Target:  5'- uAUGcaCGGUGCCGGCCUCcacGUCCAgGUc -3'
miRNA:   3'- -UACcaGCUAUGGCUGGAG---CGGGUgCG- -5'
26982 5' -57.1 NC_005809.1 + 29331 0.67 0.477988
Target:  5'- gGUGG-CGGUcGCCGGCCaaguccUCGaaCCACGCg -3'
miRNA:   3'- -UACCaGCUA-UGGCUGG------AGCg-GGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 29061 0.67 0.477988
Target:  5'- -cGGaCGGcaaACCGcuuACCUCGCCCaaagGCGCg -3'
miRNA:   3'- uaCCaGCUa--UGGC---UGGAGCGGG----UGCG- -5'
26982 5' -57.1 NC_005809.1 + 28483 0.67 0.471893
Target:  5'- aGUGGUCGAgcauccgcucggcauUGCCGAaCUCggucaucuGCCgGCGCu -3'
miRNA:   3'- -UACCAGCU---------------AUGGCUgGAG--------CGGgUGCG- -5'
26982 5' -57.1 NC_005809.1 + 28710 0.67 0.467852
Target:  5'- -aGGUCGAUGCUG-UCg-GCgCACGCg -3'
miRNA:   3'- uaCCAGCUAUGGCuGGagCGgGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 10850 0.67 0.457828
Target:  5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3'
miRNA:   3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5'
26982 5' -57.1 NC_005809.1 + 14359 0.68 0.428467
Target:  5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3'
miRNA:   3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5'
26982 5' -57.1 NC_005809.1 + 21108 0.68 0.428467
Target:  5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3'
miRNA:   3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5'
26982 5' -57.1 NC_005809.1 + 30710 0.68 0.41893
Target:  5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3'
miRNA:   3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5'
26982 5' -57.1 NC_005809.1 + 11205 0.68 0.409523
Target:  5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3'
miRNA:   3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 35576 0.68 0.409523
Target:  5'- ----gCGA-GCCGACC-CGCUCGCGCg -3'
miRNA:   3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 3637 0.69 0.397492
Target:  5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3'
miRNA:   3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 10111 0.69 0.391109
Target:  5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3'
miRNA:   3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5'
26982 5' -57.1 NC_005809.1 + 32118 0.69 0.391109
Target:  5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3'
miRNA:   3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5'
26982 5' -57.1 NC_005809.1 + 24099 0.69 0.382106
Target:  5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3'
miRNA:   3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5'
26982 5' -57.1 NC_005809.1 + 25525 0.69 0.373243
Target:  5'- -aGGUCGGUuuuGCCGccGCCggcagCGCCCcCGUa -3'
miRNA:   3'- uaCCAGCUA---UGGC--UGGa----GCGGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.