Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26983 | 5' | -58.3 | NC_005809.1 | + | 37365 | 1.07 | 0.000397 |
Target: 5'- gUAUCCGGUUGCAGGCCAGCACCACCAg -3' miRNA: 3'- -AUAGGCCAACGUCCGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 10031 | 0.75 | 0.111498 |
Target: 5'- aUcgCCGGcgGCAgcauccuGGCCGGCAUCACCAg -3' miRNA: 3'- -AuaGGCCaaCGU-------CCGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 41881 | 0.73 | 0.157129 |
Target: 5'- gUAUCuUGGgcgGCccGGCCGGCGCCGCCGu -3' miRNA: 3'- -AUAG-GCCaa-CGu-CCGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 16043 | 0.72 | 0.166137 |
Target: 5'- --gCCaGUUGUAGGCCAGUucgcgcacgugGCCGCCGc -3' miRNA: 3'- auaGGcCAACGUCCGGUCG-----------UGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 15387 | 0.71 | 0.206937 |
Target: 5'- cGUCCGcgUGCGGGCCGGCGaagaUGCCGg -3' miRNA: 3'- aUAGGCcaACGUCCGGUCGUg---GUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 365 | 0.7 | 0.224348 |
Target: 5'- cAUCCGGgugUGCuuGGCCugccgauugAGCGCgGCCAg -3' miRNA: 3'- aUAGGCCa--ACGu-CCGG---------UCGUGgUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 23737 | 0.7 | 0.249481 |
Target: 5'- --cUCGGUggcgcGCAGcagcgccauGCCGGCGCCACCGg -3' miRNA: 3'- auaGGCCAa----CGUC---------CGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 5112 | 0.69 | 0.256117 |
Target: 5'- cGUCCGG-UGC-GGCUGGCGCCGuuGa -3' miRNA: 3'- aUAGGCCaACGuCCGGUCGUGGUggU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 19619 | 0.69 | 0.269823 |
Target: 5'- cGUCCGGggucaUGCGGGCCGcGaCAUCgGCCAg -3' miRNA: 3'- aUAGGCCa----ACGUCCGGU-C-GUGG-UGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 14739 | 0.69 | 0.276895 |
Target: 5'- ---gCGGc-GC-GGCCGGCGCCACCGc -3' miRNA: 3'- auagGCCaaCGuCCGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 40818 | 0.68 | 0.298995 |
Target: 5'- --gCCaGgcGCAGGCCGGCcaugACCGCCc -3' miRNA: 3'- auaGGcCaaCGUCCGGUCG----UGGUGGu -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 3741 | 0.68 | 0.330551 |
Target: 5'- --gCCGGUgguggGCAcGUCGGUGCCGCCGc -3' miRNA: 3'- auaGGCCAa----CGUcCGGUCGUGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 19491 | 0.68 | 0.330551 |
Target: 5'- --gCCGGUggGCAGGCC-GCugCgaACCGu -3' miRNA: 3'- auaGGCCAa-CGUCCGGuCGugG--UGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 12431 | 0.67 | 0.346377 |
Target: 5'- aUGUCCGacgcggUGCAGGCCggcggcguguucuGGCGCgGCCu -3' miRNA: 3'- -AUAGGCca----ACGUCCGG-------------UCGUGgUGGu -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 29837 | 0.67 | 0.355784 |
Target: 5'- cGUCUGGgcGCGGcacCCAGCACCaacggGCCGg -3' miRNA: 3'- aUAGGCCaaCGUCc--GGUCGUGG-----UGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 30291 | 0.67 | 0.355784 |
Target: 5'- --gCCGGcacGCuGGGCCAGCAacCCGCCc -3' miRNA: 3'- auaGGCCaa-CG-UCCGGUCGU--GGUGGu -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 2823 | 0.67 | 0.355784 |
Target: 5'- --aCCGGcugaccaccuaUUGaggaaAGGCCAGC-CCGCCAa -3' miRNA: 3'- auaGGCC-----------AACg----UCCGGUCGuGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 25332 | 0.67 | 0.35925 |
Target: 5'- gUcgCCGGgauUGUccAGGCCGGCcaguucgcauagccgGCCACCGg -3' miRNA: 3'- -AuaGGCCa--ACG--UCCGGUCG---------------UGGUGGU- -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 17682 | 0.66 | 0.400768 |
Target: 5'- --gCUGGgcGUAGGCgaAGCGCCACUc -3' miRNA: 3'- auaGGCCaaCGUCCGg-UCGUGGUGGu -5' |
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26983 | 5' | -58.3 | NC_005809.1 | + | 41291 | 0.66 | 0.400768 |
Target: 5'- ---gCGG-UGUGGGCgGGCAUCACCu -3' miRNA: 3'- auagGCCaACGUCCGgUCGUGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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