miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 16178 0.66 0.71772
Target:  5'- cCGCGUcGgAGUUCAcCGaCGCCAcgcGCCa -3'
miRNA:   3'- -GUGCAaCgUCAAGUuGCcGCGGU---CGG- -5'
26984 3' -54.2 NC_005809.1 + 36981 0.66 0.71772
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 32517 0.66 0.71772
Target:  5'- cCGCGcccgUGCAGgcUggUGaUGCCGGCCa -3'
miRNA:   3'- -GUGCa---ACGUCaaGuuGCcGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 27466 0.66 0.71772
Target:  5'- cCugGUagGCAGcuauuACGGCGCgCGGUCg -3'
miRNA:   3'- -GugCAa-CGUCaagu-UGCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 8209 0.66 0.71772
Target:  5'- gCACGgccucGUAGUcgcgcuggUCGGCGGCcGUCAGCa -3'
miRNA:   3'- -GUGCaa---CGUCA--------AGUUGCCG-CGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 23723 0.66 0.71772
Target:  5'- uCGCGggcCAGUgccUCggUGGCGCgCAGCa -3'
miRNA:   3'- -GUGCaacGUCA---AGuuGCCGCG-GUCGg -5'
26984 3' -54.2 NC_005809.1 + 34858 0.66 0.711109
Target:  5'- aGCGgUGCAGgcggugugggaucacUUCGAgGGCuaCCGGCCg -3'
miRNA:   3'- gUGCaACGUC---------------AAGUUgCCGc-GGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 5290 0.66 0.706686
Target:  5'- gGCGUUGuCGGccacggcgUCGAUauuuuccaGGuCGCCGGCCa -3'
miRNA:   3'- gUGCAAC-GUCa-------AGUUG--------CC-GCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 19331 0.66 0.706686
Target:  5'- --aGgcGCGGUcuUCGGacaGGCGCCAGgCg -3'
miRNA:   3'- gugCaaCGUCA--AGUUg--CCGCGGUCgG- -5'
26984 3' -54.2 NC_005809.1 + 21041 0.66 0.706686
Target:  5'- uCAUGUUGguG---AGCGGCauGUCGGCCu -3'
miRNA:   3'- -GUGCAACguCaagUUGCCG--CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 20686 0.66 0.706686
Target:  5'- aAUGgaaGCcuuGggCGACGuGCGCCAGCUa -3'
miRNA:   3'- gUGCaa-CGu--CaaGUUGC-CGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33831 0.66 0.695574
Target:  5'- cCAUGUUGaCGGU--AGCGccGCGCCcGCCg -3'
miRNA:   3'- -GUGCAAC-GUCAagUUGC--CGCGGuCGG- -5'
26984 3' -54.2 NC_005809.1 + 17639 0.66 0.695574
Target:  5'- gCAuCGUgcgGCAGUacggccacgaucUUGAUGGCGUCGGCg -3'
miRNA:   3'- -GU-GCAa--CGUCA------------AGUUGCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 22640 0.66 0.695574
Target:  5'- cCACGgccgacaaGgAGUUCGGCGGCGacaAGCUg -3'
miRNA:   3'- -GUGCaa------CgUCAAGUUGCCGCgg-UCGG- -5'
26984 3' -54.2 NC_005809.1 + 25363 0.66 0.684397
Target:  5'- cCGCGUccUGCAacgcuccUUCGGCGGCGgcgaaaUCAGCCc -3'
miRNA:   3'- -GUGCA--ACGUc------AAGUUGCCGC------GGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 23539 0.66 0.684397
Target:  5'- gGCGcacGCGG-UCGAUGGCcUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaAGUUGCCGcGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 6819 0.66 0.684397
Target:  5'- aCACGgcGCGGguuucgUCGuugcccuCGGCGaCGGCCu -3'
miRNA:   3'- -GUGCaaCGUCa-----AGUu------GCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 27584 0.66 0.684397
Target:  5'- gCACcg-GCAGca-GGCGGCGCCAGa- -3'
miRNA:   3'- -GUGcaaCGUCaagUUGCCGCGGUCgg -5'
26984 3' -54.2 NC_005809.1 + 1460 0.66 0.684397
Target:  5'- gACGgcGCGG-UCGGCGGCcuccugGCaGGCCg -3'
miRNA:   3'- gUGCaaCGUCaAGUUGCCG------CGgUCGG- -5'
26984 3' -54.2 NC_005809.1 + 10240 0.66 0.684397
Target:  5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3'
miRNA:   3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.