Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26984 | 3' | -54.2 | NC_005809.1 | + | 24295 | 0.71 | 0.394853 |
Target: 5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3' miRNA: 3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 24546 | 0.71 | 0.404282 |
Target: 5'- cCGCGUggucgcGCAGcgcggCGAUGGCgagGCCGGCCa -3' miRNA: 3'- -GUGCAa-----CGUCaa---GUUGCCG---CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9836 | 0.71 | 0.413852 |
Target: 5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3' miRNA: 3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 16744 | 0.71 | 0.423559 |
Target: 5'- gACGUgGCGGUcacgcUCGugGGCG-UAGCCa -3' miRNA: 3'- gUGCAaCGUCA-----AGUugCCGCgGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 673 | 0.71 | 0.423559 |
Target: 5'- cCACcagGCcgccuaCGGCGGCGCCGGCCg -3' miRNA: 3'- -GUGcaaCGucaa--GUUGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15517 | 0.71 | 0.423559 |
Target: 5'- uGCGgugauggGCAGgcCGauaugcACGGUGCCGGCCu -3' miRNA: 3'- gUGCaa-----CGUCaaGU------UGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 22240 | 0.7 | 0.433402 |
Target: 5'- cCugGUUGuCGGccgCGAUGGCguauucGCCGGCCg -3' miRNA: 3'- -GugCAAC-GUCaa-GUUGCCG------CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 20619 | 0.7 | 0.433402 |
Target: 5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3' miRNA: 3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 36105 | 0.7 | 0.433402 |
Target: 5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3' miRNA: 3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9215 | 0.7 | 0.443377 |
Target: 5'- gCGCGgcGCAcGUUCuGCGGCGCgccCGGCg -3' miRNA: 3'- -GUGCaaCGU-CAAGuUGCCGCG---GUCGg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 28528 | 0.7 | 0.450435 |
Target: 5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3' miRNA: 3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 16024 | 0.7 | 0.463705 |
Target: 5'- ---aUUGCAcGUUCAaggaggGCGGCGCCAuGCUg -3' miRNA: 3'- gugcAACGU-CAAGU------UGCCGCGGU-CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 32239 | 0.7 | 0.474051 |
Target: 5'- aCACGccGCAG--CGACGGCuaCGGCCu -3' miRNA: 3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 29319 | 0.69 | 0.484511 |
Target: 5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3' miRNA: 3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 4320 | 0.69 | 0.49508 |
Target: 5'- -cCGUUGaccuccaCGAUGGUGCCAGCCu -3' miRNA: 3'- guGCAACgucaa--GUUGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 28247 | 0.69 | 0.505753 |
Target: 5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3' miRNA: 3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15555 | 0.69 | 0.516523 |
Target: 5'- cCACGUc-CAGgUCAAUGGCGCC-GUCa -3' miRNA: 3'- -GUGCAacGUCaAGUUGCCGCGGuCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 21996 | 0.69 | 0.516523 |
Target: 5'- aGCG-UGCGGguuUCGuCGGCGCCuGGCUc -3' miRNA: 3'- gUGCaACGUCa--AGUuGCCGCGG-UCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 13228 | 0.69 | 0.516523 |
Target: 5'- cCACGUaguccUGCGuuuccUUCGGCaguaGCGCCAGCCa -3' miRNA: 3'- -GUGCA-----ACGUc----AAGUUGc---CGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 31512 | 0.69 | 0.516523 |
Target: 5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3' miRNA: 3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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