miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 42459 0.67 0.63928
Target:  5'- aCGCGaaGUGGUUgGACGGCGCgCAGa- -3'
miRNA:   3'- -GUGCaaCGUCAAgUUGCCGCG-GUCgg -5'
26984 3' -54.2 NC_005809.1 + 42233 0.66 0.684397
Target:  5'- gACGgccUGCuGcgCGACGccacCGCCAGCCu -3'
miRNA:   3'- gUGCa--ACGuCaaGUUGCc---GCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 41574 0.71 0.385568
Target:  5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3'
miRNA:   3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 41511 0.67 0.649467
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 40216 0.66 0.661898
Target:  5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3'
miRNA:   3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5'
26984 3' -54.2 NC_005809.1 + 38281 0.69 0.53833
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 38177 0.68 0.594047
Target:  5'- gCACGcucaagGCccGGcgCGACGGCGCCuGGCUg -3'
miRNA:   3'- -GUGCaa----CG--UCaaGUUGCCGCGG-UCGG- -5'
26984 3' -54.2 NC_005809.1 + 37732 0.67 0.605329
Target:  5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3'
miRNA:   3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 37449 1.12 0.000508
Target:  5'- gCACGUUGCAGUUCAACGGCGCCAGCCg -3'
miRNA:   3'- -GUGCAACGUCAAGUUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 36981 0.66 0.71772
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 36105 0.7 0.433402
Target:  5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3'
miRNA:   3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5'
26984 3' -54.2 NC_005809.1 + 35261 0.79 0.132522
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26984 3' -54.2 NC_005809.1 + 34864 0.84 0.056558
Target:  5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3'
miRNA:   3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 34858 0.66 0.711109
Target:  5'- aGCGgUGCAGgcggugugggaucacUUCGAgGGCuaCCGGCCg -3'
miRNA:   3'- gUGCaACGUC---------------AAGUUgCCGc-GGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 34797 0.66 0.661898
Target:  5'- uCGCcucGCAGggCGAaGGCGCgAGCCu -3'
miRNA:   3'- -GUGcaaCGUCaaGUUgCCGCGgUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33888 0.68 0.594047
Target:  5'- gCGCGgcGCAcaccUgGGCGGCGCagCAGCCg -3'
miRNA:   3'- -GUGCaaCGUca--AgUUGCCGCG--GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33831 0.66 0.695574
Target:  5'- cCAUGUUGaCGGU--AGCGccGCGCCcGCCg -3'
miRNA:   3'- -GUGCAAC-GUCAagUUGC--CGCGGuCGG- -5'
26984 3' -54.2 NC_005809.1 + 33377 0.71 0.394853
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5'
26984 3' -54.2 NC_005809.1 + 33175 0.69 0.53833
Target:  5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3'
miRNA:   3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5'
26984 3' -54.2 NC_005809.1 + 32517 0.66 0.71772
Target:  5'- cCGCGcccgUGCAGgcUggUGaUGCCGGCCa -3'
miRNA:   3'- -GUGCa---ACGUCaaGuuGCcGCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.