miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 32239 0.7 0.474051
Target:  5'- aCACGccGCAG--CGACGGCuaCGGCCu -3'
miRNA:   3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 31512 0.69 0.516523
Target:  5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3'
miRNA:   3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 30154 0.67 0.614372
Target:  5'- cCGCGUcggacaucagcgGCAGU----UGGCGCCAGUCg -3'
miRNA:   3'- -GUGCAa-----------CGUCAaguuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 29319 0.69 0.484511
Target:  5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3'
miRNA:   3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 28648 0.68 0.594047
Target:  5'- cCGCGc-GCAGUgccaGAuCGGUGCCGGCg -3'
miRNA:   3'- -GUGCaaCGUCAag--UU-GCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 28528 0.7 0.450435
Target:  5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3'
miRNA:   3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 28388 0.71 0.394853
Target:  5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3'
miRNA:   3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 28247 0.69 0.505753
Target:  5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3'
miRNA:   3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 28186 0.67 0.616635
Target:  5'- cCACGcccaGCAGgu--GCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- -GUGCaa--CGUCaaguUGCCGCGG-----------UCGG- -5'
26984 3' -54.2 NC_005809.1 + 27827 0.74 0.250688
Target:  5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3'
miRNA:   3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 27584 0.66 0.684397
Target:  5'- gCACcg-GCAGca-GGCGGCGCCAGa- -3'
miRNA:   3'- -GUGcaaCGUCaagUUGCCGCGGUCgg -5'
26984 3' -54.2 NC_005809.1 + 27466 0.66 0.71772
Target:  5'- cCugGUagGCAGcuauuACGGCGCgCGGUCg -3'
miRNA:   3'- -GugCAa-CGUCaagu-UGCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 26130 0.67 0.627956
Target:  5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3'
miRNA:   3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 25635 0.69 0.53833
Target:  5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3'
miRNA:   3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5'
26984 3' -54.2 NC_005809.1 + 25597 0.67 0.650598
Target:  5'- uGCGgcccagGCAGUggCAaccacggcggcGCGGuCGCCAGCa -3'
miRNA:   3'- gUGCaa----CGUCAa-GU-----------UGCC-GCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 25363 0.66 0.684397
Target:  5'- cCGCGUccUGCAacgcuccUUCGGCGGCGgcgaaaUCAGCCc -3'
miRNA:   3'- -GUGCA--ACGUc------AAGUUGCCGC------GGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 24693 0.68 0.582799
Target:  5'- cCACGcccagGCuGUcCAuCGGUGCCAGUCg -3'
miRNA:   3'- -GUGCaa---CGuCAaGUuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 24546 0.71 0.404282
Target:  5'- cCGCGUggucgcGCAGcgcggCGAUGGCgagGCCGGCCa -3'
miRNA:   3'- -GUGCAa-----CGUCaa---GUUGCCG---CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 24295 0.71 0.394853
Target:  5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3'
miRNA:   3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 24137 0.68 0.594047
Target:  5'- uCACGUuuucggUGCAGgacUCGGCGGacaaCGCCAccuucGCCg -3'
miRNA:   3'- -GUGCA------ACGUCa--AGUUGCC----GCGGU-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.