Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26984 | 3' | -54.2 | NC_005809.1 | + | 16178 | 0.66 | 0.71772 |
Target: 5'- cCGCGUcGgAGUUCAcCGaCGCCAcgcGCCa -3' miRNA: 3'- -GUGCAaCgUCAAGUuGCcGCGGU---CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 16024 | 0.7 | 0.463705 |
Target: 5'- ---aUUGCAcGUUCAaggaggGCGGCGCCAuGCUg -3' miRNA: 3'- gugcAACGU-CAAGU------UGCCGCGGU-CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15555 | 0.69 | 0.516523 |
Target: 5'- cCACGUc-CAGgUCAAUGGCGCC-GUCa -3' miRNA: 3'- -GUGCAacGUCaAGUUGCCGCGGuCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15517 | 0.71 | 0.423559 |
Target: 5'- uGCGgugauggGCAGgcCGauaugcACGGUGCCGGCCu -3' miRNA: 3'- gUGCaa-----CGUCaaGU------UGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15417 | 0.67 | 0.63928 |
Target: 5'- cCGCG-UGCGGcgcgugggggacUUCGagugaugcgcGCGGCGUCAGCUu -3' miRNA: 3'- -GUGCaACGUC------------AAGU----------UGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 15300 | 0.71 | 0.389265 |
Target: 5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3' miRNA: 3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 14724 | 0.69 | 0.527384 |
Target: 5'- aCACGUUcuugagcaGCGGcgCGGcCGGCGCCA-CCg -3' miRNA: 3'- -GUGCAA--------CGUCaaGUU-GCCGCGGUcGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 13792 | 0.68 | 0.582799 |
Target: 5'- gCGCGUUGCuGgUCAGuuUGcGCGCCuguGCCu -3' miRNA: 3'- -GUGCAACGuCaAGUU--GC-CGCGGu--CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 13410 | 0.66 | 0.661898 |
Target: 5'- gCAuCGUUGCGGUaacgguucUCGucccACGGCaggcccGCCAGCUu -3' miRNA: 3'- -GU-GCAACGUCA--------AGU----UGCCG------CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 13316 | 0.68 | 0.582799 |
Target: 5'- gGCGUUGUAGgcggcguaggcuUUCGGCaGGuCGCC-GCCg -3' miRNA: 3'- gUGCAACGUC------------AAGUUG-CC-GCGGuCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 13228 | 0.69 | 0.516523 |
Target: 5'- cCACGUaguccUGCGuuuccUUCGGCaguaGCGCCAGCCa -3' miRNA: 3'- -GUGCA-----ACGUc----AAGUUGc---CGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 12583 | 0.69 | 0.53833 |
Target: 5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3' miRNA: 3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 12438 | 0.74 | 0.271321 |
Target: 5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3' miRNA: 3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 10941 | 0.68 | 0.560443 |
Target: 5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3' miRNA: 3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 10240 | 0.66 | 0.684397 |
Target: 5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3' miRNA: 3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9914 | 0.68 | 0.582799 |
Target: 5'- uCACGUcggGCAGcUUC-GCGGCGCCGa-- -3' miRNA: 3'- -GUGCAa--CGUC-AAGuUGCCGCGGUcgg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9836 | 0.71 | 0.413852 |
Target: 5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3' miRNA: 3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9215 | 0.7 | 0.443377 |
Target: 5'- gCGCGgcGCAcGUUCuGCGGCGCgccCGGCg -3' miRNA: 3'- -GUGCaaCGU-CAAGuUGCCGCG---GUCGg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 8784 | 0.68 | 0.594047 |
Target: 5'- aCGCGgcGCAcgaugggUCGGCcGCGCCGGUCa -3' miRNA: 3'- -GUGCaaCGUca-----AGUUGcCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 8632 | 0.67 | 0.627956 |
Target: 5'- -cCGcUGCGGUggCGA-GGuCGCCGGCCu -3' miRNA: 3'- guGCaACGUCAa-GUUgCC-GCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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