miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 16823 0.75 0.244103
Target:  5'- gGCGgcGCAGUUCAcGCGGCGCaUAGUUc -3'
miRNA:   3'- gUGCaaCGUCAAGU-UGCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 3811 0.75 0.231365
Target:  5'- -uCGUUGUAGUUgGGCaGGCGCUuGCCg -3'
miRNA:   3'- guGCAACGUCAAgUUG-CCGCGGuCGG- -5'
26984 3' -54.2 NC_005809.1 + 18459 0.76 0.207571
Target:  5'- gACGgucGCGGcgcCGGCGGCGUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaa-GUUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 3479 0.76 0.201962
Target:  5'- uCGCGcUGgAGUUCGACGGC-CCGGCg -3'
miRNA:   3'- -GUGCaACgUCAAGUUGCCGcGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 34864 0.84 0.056558
Target:  5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3'
miRNA:   3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 20619 0.7 0.433402
Target:  5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3'
miRNA:   3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 36105 0.7 0.433402
Target:  5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3'
miRNA:   3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5'
26984 3' -54.2 NC_005809.1 + 4361 0.68 0.571595
Target:  5'- uGCGUUGcCGGUgcgcgugaaggCGACGGCcgacuuGUCGGCCu -3'
miRNA:   3'- gUGCAAC-GUCAa----------GUUGCCG------CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 10941 0.68 0.560443
Target:  5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3'
miRNA:   3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33175 0.69 0.53833
Target:  5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3'
miRNA:   3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5'
26984 3' -54.2 NC_005809.1 + 22045 0.69 0.527384
Target:  5'- cCAUGUUGCGGUcgucgcgcuugcUCGGgucgcgguCGGCGCgCGGCUc -3'
miRNA:   3'- -GUGCAACGUCA------------AGUU--------GCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 20493 0.69 0.527384
Target:  5'- uCGCGUUGguGUUgAACGaaaGCCGGUa -3'
miRNA:   3'- -GUGCAACguCAAgUUGCcg-CGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 13228 0.69 0.516523
Target:  5'- cCACGUaguccUGCGuuuccUUCGGCaguaGCGCCAGCCa -3'
miRNA:   3'- -GUGCA-----ACGUc----AAGUUGc---CGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 21996 0.69 0.516523
Target:  5'- aGCG-UGCGGguuUCGuCGGCGCCuGGCUc -3'
miRNA:   3'- gUGCaACGUCa--AGUuGCCGCGG-UCGG- -5'
26984 3' -54.2 NC_005809.1 + 15555 0.69 0.516523
Target:  5'- cCACGUc-CAGgUCAAUGGCGCC-GUCa -3'
miRNA:   3'- -GUGCAacGUCaAGUUGCCGCGGuCGG- -5'
26984 3' -54.2 NC_005809.1 + 4320 0.69 0.49508
Target:  5'- -cCGUUGaccuccaCGAUGGUGCCAGCCu -3'
miRNA:   3'- guGCAACgucaa--GUUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 29319 0.69 0.484511
Target:  5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3'
miRNA:   3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 28528 0.7 0.450435
Target:  5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3'
miRNA:   3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 9215 0.7 0.443377
Target:  5'- gCGCGgcGCAcGUUCuGCGGCGCgccCGGCg -3'
miRNA:   3'- -GUGCaaCGU-CAAGuUGCCGCG---GUCGg -5'
26984 3' -54.2 NC_005809.1 + 22240 0.7 0.433402
Target:  5'- cCugGUUGuCGGccgCGAUGGCguauucGCCGGCCg -3'
miRNA:   3'- -GugCAAC-GUCaa-GUUGCCG------CGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.