miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 35261 0.79 0.132522
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26984 3' -54.2 NC_005809.1 + 25635 0.69 0.53833
Target:  5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3'
miRNA:   3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5'
26984 3' -54.2 NC_005809.1 + 12583 0.69 0.53833
Target:  5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3'
miRNA:   3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5'
26984 3' -54.2 NC_005809.1 + 36981 0.66 0.71772
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 6197 0.74 0.278497
Target:  5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3'
miRNA:   3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 2825 0.73 0.285822
Target:  5'- cCAgGUgcucGCGGccacgcgCAGCGGCGCCAGCa -3'
miRNA:   3'- -GUgCAa---CGUCaa-----GUUGCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 5072 0.71 0.384648
Target:  5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3'
miRNA:   3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 41574 0.71 0.385568
Target:  5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3'
miRNA:   3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 9836 0.71 0.413852
Target:  5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3'
miRNA:   3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 14724 0.69 0.527384
Target:  5'- aCACGUUcuugagcaGCGGcgCGGcCGGCGCCA-CCg -3'
miRNA:   3'- -GUGCAA--------CGUCaaGUU-GCCGCGGUcGG- -5'
26984 3' -54.2 NC_005809.1 + 32239 0.7 0.474051
Target:  5'- aCACGccGCAG--CGACGGCuaCGGCCu -3'
miRNA:   3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33377 0.71 0.394853
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5'
26984 3' -54.2 NC_005809.1 + 21824 0.78 0.144372
Target:  5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3'
miRNA:   3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 28247 0.69 0.505753
Target:  5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3'
miRNA:   3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 1851 0.74 0.271321
Target:  5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3'
miRNA:   3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 15300 0.71 0.389265
Target:  5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3'
miRNA:   3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 31512 0.69 0.516523
Target:  5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3'
miRNA:   3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 38281 0.69 0.53833
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 12438 0.74 0.271321
Target:  5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3'
miRNA:   3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 18063 0.72 0.349899
Target:  5'- gACGUgauCGG--CGugGGCGCCAGCCc -3'
miRNA:   3'- gUGCAac-GUCaaGUugCCGCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.