Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26984 | 3' | -54.2 | NC_005809.1 | + | 28247 | 0.69 | 0.505753 |
Target: 5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3' miRNA: 3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 12438 | 0.74 | 0.271321 |
Target: 5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3' miRNA: 3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 20686 | 0.66 | 0.706686 |
Target: 5'- aAUGgaaGCcuuGggCGACGuGCGCCAGCUa -3' miRNA: 3'- gUGCaa-CGu--CaaGUUGC-CGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 8113 | 0.66 | 0.661898 |
Target: 5'- gCACGUgcucgGCcauUUCGGCGGUGacuucCCAGCCc -3' miRNA: 3'- -GUGCAa----CGuc-AAGUUGCCGC-----GGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 25635 | 0.69 | 0.53833 |
Target: 5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3' miRNA: 3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 1851 | 0.74 | 0.271321 |
Target: 5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3' miRNA: 3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 41511 | 0.67 | 0.649467 |
Target: 5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3' miRNA: 3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 21824 | 0.78 | 0.144372 |
Target: 5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3' miRNA: 3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 35261 | 0.79 | 0.132522 |
Target: 5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3' miRNA: 3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 33377 | 0.71 | 0.394853 |
Target: 5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3' miRNA: 3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 38281 | 0.69 | 0.53833 |
Target: 5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3' miRNA: 3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 26130 | 0.67 | 0.627956 |
Target: 5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3' miRNA: 3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 40216 | 0.66 | 0.661898 |
Target: 5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3' miRNA: 3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 10240 | 0.66 | 0.684397 |
Target: 5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3' miRNA: 3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 34858 | 0.66 | 0.711109 |
Target: 5'- aGCGgUGCAGgcggugugggaucacUUCGAgGGCuaCCGGCCg -3' miRNA: 3'- gUGCaACGUC---------------AAGUUgCCGc-GGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 9836 | 0.71 | 0.413852 |
Target: 5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3' miRNA: 3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 6197 | 0.74 | 0.278497 |
Target: 5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3' miRNA: 3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 5072 | 0.71 | 0.384648 |
Target: 5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3' miRNA: 3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 4247 | 0.68 | 0.571595 |
Target: 5'- gAUGgcGUAGU----CGGUGCCGGCCg -3' miRNA: 3'- gUGCaaCGUCAaguuGCCGCGGUCGG- -5' |
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26984 | 3' | -54.2 | NC_005809.1 | + | 20619 | 0.7 | 0.433402 |
Target: 5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3' miRNA: 3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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