miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26984 3' -54.2 NC_005809.1 + 1460 0.66 0.684397
Target:  5'- gACGgcGCGG-UCGGCGGCcuccugGCaGGCCg -3'
miRNA:   3'- gUGCaaCGUCaAGUUGCCG------CGgUCGG- -5'
26984 3' -54.2 NC_005809.1 + 6819 0.66 0.684397
Target:  5'- aCACGgcGCGGguuucgUCGuugcccuCGGCGaCGGCCu -3'
miRNA:   3'- -GUGCaaCGUCa-----AGUu------GCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 23539 0.66 0.684397
Target:  5'- gGCGcacGCGG-UCGAUGGCcUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaAGUUGCCGcGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 17639 0.66 0.695574
Target:  5'- gCAuCGUgcgGCAGUacggccacgaucUUGAUGGCGUCGGCg -3'
miRNA:   3'- -GU-GCAa--CGUCA------------AGUUGCCGCGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 33831 0.66 0.695574
Target:  5'- cCAUGUUGaCGGU--AGCGccGCGCCcGCCg -3'
miRNA:   3'- -GUGCAAC-GUCAagUUGC--CGCGGuCGG- -5'
26984 3' -54.2 NC_005809.1 + 23723 0.66 0.71772
Target:  5'- uCGCGggcCAGUgccUCggUGGCGCgCAGCa -3'
miRNA:   3'- -GUGCaacGUCA---AGuuGCCGCG-GUCGg -5'
26984 3' -54.2 NC_005809.1 + 19331 0.66 0.706686
Target:  5'- --aGgcGCGGUcuUCGGacaGGCGCCAGgCg -3'
miRNA:   3'- gugCaaCGUCA--AGUUg--CCGCGGUCgG- -5'
26984 3' -54.2 NC_005809.1 + 8209 0.66 0.71772
Target:  5'- gCACGgccucGUAGUcgcgcuggUCGGCGGCcGUCAGCa -3'
miRNA:   3'- -GUGCaa---CGUCA--------AGUUGCCG-CGGUCGg -5'
26984 3' -54.2 NC_005809.1 + 21041 0.66 0.706686
Target:  5'- uCAUGUUGguG---AGCGGCauGUCGGCCu -3'
miRNA:   3'- -GUGCAACguCaagUUGCCG--CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 20619 0.7 0.433402
Target:  5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3'
miRNA:   3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 15517 0.71 0.423559
Target:  5'- uGCGgugauggGCAGgcCGauaugcACGGUGCCGGCCu -3'
miRNA:   3'- gUGCaa-----CGUCaaGU------UGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 673 0.71 0.423559
Target:  5'- cCACcagGCcgccuaCGGCGGCGCCGGCCg -3'
miRNA:   3'- -GUGcaaCGucaa--GUUGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 2230 0.68 0.582799
Target:  5'- cCACGc-GCAGca-GGCGGCGCgUGGCCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 4247 0.68 0.571595
Target:  5'- gAUGgcGUAGU----CGGUGCCGGCCg -3'
miRNA:   3'- gUGCaaCGUCAaguuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 4361 0.68 0.571595
Target:  5'- uGCGUUGcCGGUgcgcgugaaggCGACGGCcgacuuGUCGGCCu -3'
miRNA:   3'- gUGCAAC-GUCAa----------GUUGCCG------CGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 27827 0.74 0.250688
Target:  5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3'
miRNA:   3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 10941 0.68 0.560443
Target:  5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3'
miRNA:   3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5'
26984 3' -54.2 NC_005809.1 + 33175 0.69 0.53833
Target:  5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3'
miRNA:   3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5'
26984 3' -54.2 NC_005809.1 + 22045 0.69 0.527384
Target:  5'- cCAUGUUGCGGUcgucgcgcuugcUCGGgucgcgguCGGCGCgCGGCUc -3'
miRNA:   3'- -GUGCAACGUCA------------AGUU--------GCCGCG-GUCGG- -5'
26984 3' -54.2 NC_005809.1 + 20493 0.69 0.527384
Target:  5'- uCGCGUUGguGUUgAACGaaaGCCGGUa -3'
miRNA:   3'- -GUGCAACguCAAgUUGCcg-CGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.