Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26984 | 5' | -62.1 | NC_005809.1 | + | 891 | 0.75 | 0.067309 |
Target: 5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3' miRNA: 3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 1192 | 0.66 | 0.310881 |
Target: 5'- gGGGUCGGCCgGgUUGUUggaaUAACCGCc -3' miRNA: 3'- aCCCGGCCGG-CgGACAAg---GUUGGCGu -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 1712 | 0.69 | 0.172686 |
Target: 5'- gUGGGCCGGCgUGCCggcgagGgcgUCCAAguccUCGCGg -3' miRNA: 3'- -ACCCGGCCG-GCGGa-----Ca--AGGUU----GGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 1762 | 0.68 | 0.213169 |
Target: 5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3' miRNA: 3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 4173 | 0.68 | 0.223913 |
Target: 5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3' miRNA: 3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 4258 | 0.67 | 0.255037 |
Target: 5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3' miRNA: 3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 5264 | 0.66 | 0.310881 |
Target: 5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3' miRNA: 3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 5523 | 0.69 | 0.182113 |
Target: 5'- aGGacacGCCGGCCGCCcagGUUCC-GCC-CAg -3' miRNA: 3'- aCC----CGGCCGGCGGa--CAAGGuUGGcGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 7025 | 0.71 | 0.121412 |
Target: 5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3' miRNA: 3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 7168 | 0.66 | 0.318481 |
Target: 5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3' miRNA: 3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 8036 | 0.68 | 0.224491 |
Target: 5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3' miRNA: 3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 8796 | 0.7 | 0.148571 |
Target: 5'- aUGGGUCGGCCGCgCcggucaguaccgaucUGcugggucgggCCAGCCGCAa -3' miRNA: 3'- -ACCCGGCCGGCG-G---------------ACaa--------GGUUGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 9489 | 0.69 | 0.186996 |
Target: 5'- cGGGCgucauGCCaGCCUGUUCC-GCCGUg -3' miRNA: 3'- aCCCGgc---CGG-CGGACAAGGuUGGCGu -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 11600 | 0.66 | 0.310881 |
Target: 5'- -cGGCUGGCCGCCgggcagcaGUgCCAGCggaaGCAu -3' miRNA: 3'- acCCGGCCGGCGGa-------CAaGGUUGg---CGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 12447 | 0.68 | 0.202341 |
Target: 5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3' miRNA: 3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 13465 | 0.66 | 0.318481 |
Target: 5'- cGGGCgCGGUgucgggcaUGaCCUGggcgaugCCGACCGCGc -3' miRNA: 3'- aCCCG-GCCG--------GC-GGACaa-----GGUUGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 14136 | 0.66 | 0.281864 |
Target: 5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3' miRNA: 3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 14923 | 0.66 | 0.303419 |
Target: 5'- -uGGCCGGCCuCaaGUgCCGACUGCGc -3' miRNA: 3'- acCCGGCCGGcGgaCAaGGUUGGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 15140 | 0.72 | 0.102856 |
Target: 5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3' miRNA: 3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5' |
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26984 | 5' | -62.1 | NC_005809.1 | + | 16937 | 0.67 | 0.260885 |
Target: 5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3' miRNA: 3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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