miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26985 3' -55.3 NC_005809.1 + 37918 0.99 0.004055
Target:  5'- cGGCAUC-ACCUUGACGCGAUGGCCGAc -3'
miRNA:   3'- -CCGUAGcUGGAACUGCGCUACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 5625 0.83 0.065413
Target:  5'- cGGCGUCGAUgUUGGCGaGGUGGCCGu -3'
miRNA:   3'- -CCGUAGCUGgAACUGCgCUACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 21237 0.79 0.123296
Target:  5'- uGGCA---ACCUgGGCGCGGUGGCCGGc -3'
miRNA:   3'- -CCGUagcUGGAaCUGCGCUACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 7448 0.78 0.138005
Target:  5'- cGGCuUCGGCCUUcGCGCGAaUGGCCu- -3'
miRNA:   3'- -CCGuAGCUGGAAcUGCGCU-ACCGGcu -5'
26985 3' -55.3 NC_005809.1 + 27020 0.76 0.17234
Target:  5'- cGGCGccaUUGACCUgGACGUGGaGGCCGGc -3'
miRNA:   3'- -CCGU---AGCUGGAaCUGCGCUaCCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 15720 0.75 0.2141
Target:  5'- gGGCAUCGAac-UGGCGCGA-GGCCa- -3'
miRNA:   3'- -CCGUAGCUggaACUGCGCUaCCGGcu -5'
26985 3' -55.3 NC_005809.1 + 6740 0.75 0.219306
Target:  5'- cGGCGUCGGCCUUGGCGCcccacuuuuccuuGGcgaccugcucgaUGGCCu- -3'
miRNA:   3'- -CCGUAGCUGGAACUGCG-------------CU------------ACCGGcu -5'
26985 3' -55.3 NC_005809.1 + 38538 0.74 0.231877
Target:  5'- cGGCugcgcUCGACCcgcgcggcaUGACGCuGGUGGCCGGc -3'
miRNA:   3'- -CCGu----AGCUGGa--------ACUGCG-CUACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 37264 0.74 0.238073
Target:  5'- uGGCcggCGACCUggaaaauaucGACGCcGUGGCCGAc -3'
miRNA:   3'- -CCGua-GCUGGAa---------CUGCGcUACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 1753 0.74 0.244407
Target:  5'- gGGCGgucauggcCGGCCUgcgccUGGCGCGucgGGCCGAu -3'
miRNA:   3'- -CCGUa-------GCUGGA-----ACUGCGCua-CCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 15141 0.73 0.3002
Target:  5'- gGGCcugCGGCCgccgGGCGCGGUGcGCCa- -3'
miRNA:   3'- -CCGua-GCUGGaa--CUGCGCUAC-CGGcu -5'
26985 3' -55.3 NC_005809.1 + 13878 0.72 0.323525
Target:  5'- aGCAUCGACCUugugaacgacgUGGCGCGccGcGCUGGc -3'
miRNA:   3'- cCGUAGCUGGA-----------ACUGCGCuaC-CGGCU- -5'
26985 3' -55.3 NC_005809.1 + 27613 0.72 0.323525
Target:  5'- uGGuCGUCGcCCUUGACGaug-GGCCGGu -3'
miRNA:   3'- -CC-GUAGCuGGAACUGCgcuaCCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 27748 0.72 0.339811
Target:  5'- cGGCAUCGACCUgggcgaaGGCaGCGcc-GCCGAg -3'
miRNA:   3'- -CCGUAGCUGGAa------CUG-CGCuacCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 13168 0.71 0.348174
Target:  5'- cGGCcaguGUCGGCCgcgcugGGCGCccuUGGCCGGc -3'
miRNA:   3'- -CCG----UAGCUGGaa----CUGCGcu-ACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 37113 0.71 0.348174
Target:  5'- ----aCGACCgcGGCGUGAUGGUCGAu -3'
miRNA:   3'- ccguaGCUGGaaCUGCGCUACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 23573 0.71 0.374136
Target:  5'- cGGCAggugCGGgCggggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -CCGUa---GCUgGaa--CUGC-GCUACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 13544 0.71 0.383076
Target:  5'- gGGUAUCGACCUggccgaaGCGCGGcgccUGGUCGc -3'
miRNA:   3'- -CCGUAGCUGGAac-----UGCGCU----ACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 15440 0.71 0.392158
Target:  5'- aGCuuGUUGAuguUCUUGACGCGcccuUGGCCGAa -3'
miRNA:   3'- cCG--UAGCU---GGAACUGCGCu---ACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 7234 0.7 0.401378
Target:  5'- uGCAacuUCGGCCacUGGCGCG--GGCCGAu -3'
miRNA:   3'- cCGU---AGCUGGa-ACUGCGCuaCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.