miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26985 5' -57.5 NC_005809.1 + 10033 0.77 0.114987
Target:  5'- cGCCggcggCAGCAUCCUgGCCGGCAUCAcCa -3'
miRNA:   3'- -CGG-----GUCGUAGGGgCGGCUGUAGUaGc -5'
26985 5' -57.5 NC_005809.1 + 7787 0.67 0.465822
Target:  5'- cGCCCuGCgaggcgaugggcauGUCCCacuCGCUGAUAUgGUCGa -3'
miRNA:   3'- -CGGGuCG--------------UAGGG---GCGGCUGUAgUAGC- -5'
26985 5' -57.5 NC_005809.1 + 24537 0.67 0.478935
Target:  5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3'
miRNA:   3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5'
26985 5' -57.5 NC_005809.1 + 11562 0.66 0.552316
Target:  5'- cGgCCGGCAagCCCGUgGACAg-GUCGc -3'
miRNA:   3'- -CgGGUCGUagGGGCGgCUGUagUAGC- -5'
26985 5' -57.5 NC_005809.1 + 5914 0.73 0.210092
Target:  5'- cGUCCGGCAUCUuuucgCCGCUGGCggCAUCc -3'
miRNA:   3'- -CGGGUCGUAGG-----GGCGGCUGuaGUAGc -5'
26985 5' -57.5 NC_005809.1 + 5105 0.73 0.215726
Target:  5'- gGCCCAGCGUCCggugCgGCUGGCGcCGUUGa -3'
miRNA:   3'- -CGGGUCGUAGG----GgCGGCUGUaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 24909 0.72 0.239571
Target:  5'- cGCCCAGC----CCGCCGACGcCAUCa -3'
miRNA:   3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5'
26985 5' -57.5 NC_005809.1 + 31303 0.72 0.245867
Target:  5'- gGCCgAGCGUCCCagCGCCGcagcGCAaacccUCAUCGc -3'
miRNA:   3'- -CGGgUCGUAGGG--GCGGC----UGU-----AGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 27430 0.7 0.32436
Target:  5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3'
miRNA:   3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5'
26985 5' -57.5 NC_005809.1 + 22959 0.68 0.439199
Target:  5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3'
miRNA:   3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5'
26985 5' -57.5 NC_005809.1 + 27721 0.69 0.340492
Target:  5'- cGCCCAGCGUgCggcgcuggCCGCCaACggCAUCGa -3'
miRNA:   3'- -CGGGUCGUAgG--------GGCGGcUGuaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 189 0.7 0.293825
Target:  5'- -gCCGGCGucaUCCCCGCCaucaGCAUCAUgGu -3'
miRNA:   3'- cgGGUCGU---AGGGGCGGc---UGUAGUAgC- -5'
26985 5' -57.5 NC_005809.1 + 17002 0.75 0.143727
Target:  5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3'
miRNA:   3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 29405 0.69 0.365761
Target:  5'- cGCCCAGCGcggccgacaCUgGCCGACAUCGa-- -3'
miRNA:   3'- -CGGGUCGUag-------GGgCGGCUGUAGUagc -5'
26985 5' -57.5 NC_005809.1 + 27178 0.74 0.160444
Target:  5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3'
miRNA:   3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5'
26985 5' -57.5 NC_005809.1 + 6396 0.72 0.252299
Target:  5'- cGCCgCGGCGcCCUCGgUGAUGUCGUCGa -3'
miRNA:   3'- -CGG-GUCGUaGGGGCgGCUGUAGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 40285 0.68 0.420049
Target:  5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3'
miRNA:   3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5'
26985 5' -57.5 NC_005809.1 + 26970 0.67 0.478935
Target:  5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3'
miRNA:   3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5'
26985 5' -57.5 NC_005809.1 + 14336 0.73 0.204584
Target:  5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3'
miRNA:   3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 19142 0.73 0.215726
Target:  5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3'
miRNA:   3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.