Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26985 | 5' | -57.5 | NC_005809.1 | + | 14336 | 0.73 | 0.204584 |
Target: 5'- aGCCUGGCGcaguccgaCCCGCgCGugGUCGUCGg -3' miRNA: 3'- -CGGGUCGUag------GGGCG-GCugUAGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 15207 | 0.69 | 0.383312 |
Target: 5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3' miRNA: 3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 17002 | 0.75 | 0.143727 |
Target: 5'- aCCgCGGCGuacaacUCCgaCGCCGACAUCAUCGg -3' miRNA: 3'- cGG-GUCGU------AGGg-GCGGCUGUAGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 17430 | 0.73 | 0.215726 |
Target: 5'- cGCCCuugAGCAguggCCCCGCCaGCAUCGa-- -3' miRNA: 3'- -CGGG---UCGUa---GGGGCGGcUGUAGUagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19010 | 0.66 | 0.50986 |
Target: 5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3' miRNA: 3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19037 | 0.67 | 0.489145 |
Target: 5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3' miRNA: 3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19066 | 0.7 | 0.32436 |
Target: 5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3' miRNA: 3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19142 | 0.73 | 0.215726 |
Target: 5'- aUCC-GCAUCCCgGCCGGCGUCGc-- -3' miRNA: 3'- cGGGuCGUAGGGgCGGCUGUAGUagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19966 | 0.67 | 0.47792 |
Target: 5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3' miRNA: 3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 20598 | 0.66 | 0.530934 |
Target: 5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3' miRNA: 3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 22959 | 0.68 | 0.439199 |
Target: 5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3' miRNA: 3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 24537 | 0.67 | 0.478935 |
Target: 5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3' miRNA: 3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 24594 | 0.67 | 0.458838 |
Target: 5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3' miRNA: 3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 24909 | 0.72 | 0.239571 |
Target: 5'- cGCCCAGC----CCGCCGACGcCAUCa -3' miRNA: 3'- -CGGGUCGuaggGGCGGCUGUaGUAGc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 25484 | 0.66 | 0.499455 |
Target: 5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3' miRNA: 3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 25649 | 0.66 | 0.530934 |
Target: 5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3' miRNA: 3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 25936 | 0.7 | 0.293825 |
Target: 5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3' miRNA: 3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 26250 | 0.67 | 0.468832 |
Target: 5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3' miRNA: 3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 26970 | 0.67 | 0.478935 |
Target: 5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3' miRNA: 3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 27178 | 0.74 | 0.160444 |
Target: 5'- cGUCCGGCAUCUUCGCCGGCccgCAcgCGg -3' miRNA: 3'- -CGGGUCGUAGGGGCGGCUGua-GUa-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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