miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26986 3' -55.5 NC_005809.1 + 38022 1.11 0.000461
Target:  5'- cGGCGACUUCGGCCUCAAGCCCAAGACc -3'
miRNA:   3'- -CCGCUGAAGCCGGAGUUCGGGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 36379 0.81 0.072966
Target:  5'- cGGCGGCUaUCGGCUUCGGGuUCCAAGAg -3'
miRNA:   3'- -CCGCUGA-AGCCGGAGUUC-GGGUUCUg -5'
26986 3' -55.5 NC_005809.1 + 12451 0.8 0.083991
Target:  5'- cGGCGGCguguucuggcgCGGCCUCAucGCCUggGACa -3'
miRNA:   3'- -CCGCUGaa---------GCCGGAGUu-CGGGuuCUG- -5'
26986 3' -55.5 NC_005809.1 + 11551 0.79 0.100592
Target:  5'- cGCGAUUgccUCGGCCggCAAGCCCGuGGACa -3'
miRNA:   3'- cCGCUGA---AGCCGGa-GUUCGGGU-UCUG- -5'
26986 3' -55.5 NC_005809.1 + 688 0.77 0.130261
Target:  5'- cGGCGGCgcCGGCCgggccGCCCAAGAUa -3'
miRNA:   3'- -CCGCUGaaGCCGGaguu-CGGGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 15303 0.74 0.214241
Target:  5'- cGGCGaACUgcgguucauugccUCGGCCaaGAGCCUggGGCg -3'
miRNA:   3'- -CCGC-UGA-------------AGCCGGagUUCGGGuuCUG- -5'
26986 3' -55.5 NC_005809.1 + 4888 0.74 0.21482
Target:  5'- cGGCGACggCGGCCUCGuuuucGGCCaCGguGGAa -3'
miRNA:   3'- -CCGCUGaaGCCGGAGU-----UCGG-GU--UCUg -5'
26986 3' -55.5 NC_005809.1 + 36293 0.72 0.287098
Target:  5'- gGGCGACcugUUCGGCCU---GCCCAGcGCg -3'
miRNA:   3'- -CCGCUG---AAGCCGGAguuCGGGUUcUG- -5'
26986 3' -55.5 NC_005809.1 + 12761 0.72 0.302134
Target:  5'- uGGuCGACgauucaUCGGCaUCGAGCgCGAGACa -3'
miRNA:   3'- -CC-GCUGa-----AGCCGgAGUUCGgGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 9457 0.72 0.309877
Target:  5'- cGGCGACaUUCagGGCCUUggGUUCAuGGGCg -3'
miRNA:   3'- -CCGCUG-AAG--CCGGAGuuCGGGU-UCUG- -5'
26986 3' -55.5 NC_005809.1 + 33996 0.71 0.325813
Target:  5'- aGGcCGcACgcgCGGCCUaCGAcGCCCAGGAUg -3'
miRNA:   3'- -CC-GC-UGaa-GCCGGA-GUU-CGGGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 10765 0.71 0.341508
Target:  5'- -uCGACUUCGGCCcgCAguucuucGGCCUggGAUu -3'
miRNA:   3'- ccGCUGAAGCCGGa-GU-------UCGGGuuCUG- -5'
26986 3' -55.5 NC_005809.1 + 8818 0.7 0.362981
Target:  5'- aGGCGguACUuggugUCGGCCUugauaccguccucgcCGacguAGCCCAGGACg -3'
miRNA:   3'- -CCGC--UGA-----AGCCGGA---------------GU----UCGGGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 616 0.7 0.368272
Target:  5'- cGGCGAUgaUGGCCUC-AGCCUc-GGCg -3'
miRNA:   3'- -CCGCUGaaGCCGGAGuUCGGGuuCUG- -5'
26986 3' -55.5 NC_005809.1 + 23215 0.7 0.386287
Target:  5'- cGGUGAaUUCGGCCUCGgccucGGCCaccGACc -3'
miRNA:   3'- -CCGCUgAAGCCGGAGU-----UCGGguuCUG- -5'
26986 3' -55.5 NC_005809.1 + 7247 0.7 0.39551
Target:  5'- cGGCGAUgUCGGCC----GCCCAGGuCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaguuCGGGUUCuG- -5'
26986 3' -55.5 NC_005809.1 + 35328 0.7 0.40205
Target:  5'- cGGCGACaUCGGCC-CGcGCCaguggccgaaguugCAGGGCu -3'
miRNA:   3'- -CCGCUGaAGCCGGaGUuCGG--------------GUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 340 0.69 0.410559
Target:  5'- cGGUGGCgucgcgcagcaGGCCguccgcCAGGCCCGAGAa -3'
miRNA:   3'- -CCGCUGaag--------CCGGa-----GUUCGGGUUCUg -5'
26986 3' -55.5 NC_005809.1 + 7447 0.69 0.411511
Target:  5'- -uCGGCUUCGGCCUUcgcgcgaauggccuuGCaCCAGGACu -3'
miRNA:   3'- ccGCUGAAGCCGGAGuu-------------CG-GGUUCUG- -5'
26986 3' -55.5 NC_005809.1 + 7685 0.69 0.424015
Target:  5'- uGGCGGCgaucugCGGCCgguAGCCCucGAa -3'
miRNA:   3'- -CCGCUGaa----GCCGGaguUCGGGuuCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.