miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 3' -56.3 NC_005809.1 + 27243 0.67 0.519014
Target:  5'- cCCUACGGCUcaCCGCcuGCaCUCAAGaGCg -3'
miRNA:   3'- uGGAUGCUGAc-GGCG--UGcGAGUUC-CG- -5'
26987 3' -56.3 NC_005809.1 + 27507 0.67 0.519014
Target:  5'- gGCCU-CGGCcGCCagcuucucgGCGCGgUCGGGGUc -3'
miRNA:   3'- -UGGAuGCUGaCGG---------CGUGCgAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 12478 0.67 0.519014
Target:  5'- cGCCUGgGACaaggGCCGUgGCGC-CcGGGCg -3'
miRNA:   3'- -UGGAUgCUGa---CGGCG-UGCGaGuUCCG- -5'
26987 3' -56.3 NC_005809.1 + 20882 0.67 0.50836
Target:  5'- aACCU-CGAcCUGUCGCAC-CUUcuGGCu -3'
miRNA:   3'- -UGGAuGCU-GACGGCGUGcGAGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 18282 0.67 0.50836
Target:  5'- gACCUcaccgcccccACGuggucACUGuCCGgcgcCACGCUCAAGGUg -3'
miRNA:   3'- -UGGA----------UGC-----UGAC-GGC----GUGCGAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 29269 0.67 0.487337
Target:  5'- cGCCUACaACgccgGCCccgGCGCGCUgCAAucGGCg -3'
miRNA:   3'- -UGGAUGcUGa---CGG---CGUGCGA-GUU--CCG- -5'
26987 3' -56.3 NC_005809.1 + 16107 0.68 0.476981
Target:  5'- gACC-ACGACcgGCUGCACG-UCGGuGGCc -3'
miRNA:   3'- -UGGaUGCUGa-CGGCGUGCgAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 40171 0.68 0.476981
Target:  5'- cACCUACGcUUGCCGCccugacaaggguACGCaCGcGGGCg -3'
miRNA:   3'- -UGGAUGCuGACGGCG------------UGCGaGU-UCCG- -5'
26987 3' -56.3 NC_005809.1 + 9202 0.68 0.476981
Target:  5'- gGCCUgcucgGCGGCgcGgCGCACGUUCugcGGCg -3'
miRNA:   3'- -UGGA-----UGCUGa-CgGCGUGCGAGuu-CCG- -5'
26987 3' -56.3 NC_005809.1 + 36562 0.68 0.466734
Target:  5'- uGCCUAUccaGAacgGCaCGCACGCUUAcgccgagaAGGCa -3'
miRNA:   3'- -UGGAUG---CUga-CG-GCGUGCGAGU--------UCCG- -5'
26987 3' -56.3 NC_005809.1 + 29991 0.68 0.466734
Target:  5'- cAUCgACGGCUauuucaucGCCGCGCaGCgCGAGGCc -3'
miRNA:   3'- -UGGaUGCUGA--------CGGCGUG-CGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 27850 0.68 0.466734
Target:  5'- uGCCUGgGGCUaCCGgGCGC--AGGGCa -3'
miRNA:   3'- -UGGAUgCUGAcGGCgUGCGagUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 4631 0.68 0.466734
Target:  5'- gGCCcGCG-CUGCCGCAgGgUC--GGCa -3'
miRNA:   3'- -UGGaUGCuGACGGCGUgCgAGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 8472 0.68 0.456603
Target:  5'- gGCCUGCGA-UGCCGCA-GC-CGAcGCg -3'
miRNA:   3'- -UGGAUGCUgACGGCGUgCGaGUUcCG- -5'
26987 3' -56.3 NC_005809.1 + 4025 0.68 0.456603
Target:  5'- cACCaGCGucaUGCCGCGCgGgUCGAGcGCa -3'
miRNA:   3'- -UGGaUGCug-ACGGCGUG-CgAGUUC-CG- -5'
26987 3' -56.3 NC_005809.1 + 31154 0.68 0.456603
Target:  5'- gACCUGCacgccGGCUcGCCGC-UGCUCAAGa- -3'
miRNA:   3'- -UGGAUG-----CUGA-CGGCGuGCGAGUUCcg -5'
26987 3' -56.3 NC_005809.1 + 29759 0.68 0.446591
Target:  5'- gGCCU-CGGCUGCUGCcagGCGCgugcgCGAgauuucGGCa -3'
miRNA:   3'- -UGGAuGCUGACGGCG---UGCGa----GUU------CCG- -5'
26987 3' -56.3 NC_005809.1 + 27688 0.68 0.446591
Target:  5'- gUCUugGAauacagGCCGCGCGCcggCAGcGGCu -3'
miRNA:   3'- uGGAugCUga----CGGCGUGCGa--GUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 11331 0.68 0.446591
Target:  5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3'
miRNA:   3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 8406 0.68 0.436702
Target:  5'- aGCCaguCGGCcaggGCCGUGCGCUUgucuacggccuuGAGGCu -3'
miRNA:   3'- -UGGau-GCUGa---CGGCGUGCGAG------------UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.