Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 14748 | 0.66 | 0.258292 |
Target: 5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3' miRNA: 3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 654 | 0.67 | 0.252523 |
Target: 5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3' miRNA: 3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 38072 | 0.67 | 0.240084 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 20617 | 0.67 | 0.234058 |
Target: 5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3' miRNA: 3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 8601 | 0.67 | 0.234058 |
Target: 5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3' miRNA: 3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 42221 | 0.67 | 0.234058 |
Target: 5'- uCGG-GCCUGGCggacggccugcUGCGCGacgccaCCGCCaGCc -3' miRNA: 3'- -GCCgCGGACCG-----------ACGCGUa-----GGCGGaCG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 20748 | 0.67 | 0.22816 |
Target: 5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3' miRNA: 3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 2341 | 0.67 | 0.22816 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 27842 | 0.67 | 0.222388 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 14401 | 0.67 | 0.222388 |
Target: 5'- aGGCGUagcgaaGCUGgGCGUCgccaggcgCGCCUGCg -3' miRNA: 3'- gCCGCGgac---CGACgCGUAG--------GCGGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 16962 | 0.67 | 0.222388 |
Target: 5'- uGGCGCCgcgccgccgUGGUUGC-CA-CUGCCUGg -3' miRNA: 3'- gCCGCGG---------ACCGACGcGUaGGCGGACg -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 21190 | 0.67 | 0.222388 |
Target: 5'- gCGGCcuGCugCUGGuCUGCGCGU-UGCUUGCg -3' miRNA: 3'- -GCCG--CG--GACC-GACGCGUAgGCGGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 18430 | 0.67 | 0.216741 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 2243 | 0.67 | 0.216741 |
Target: 5'- gCGGCGCgUGGCcGCGCAaugaaUCUuCUUGUc -3' miRNA: 3'- -GCCGCGgACCGaCGCGU-----AGGcGGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 39046 | 0.67 | 0.216741 |
Target: 5'- gCGGUGUgcGGCUGUaugucuauaaGUGUCCGCaCUGCa -3' miRNA: 3'- -GCCGCGgaCCGACG----------CGUAGGCG-GACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 1647 | 0.68 | 0.211217 |
Target: 5'- uCGGgGUa-GGuCUGCGCGUCCuGUUUGCg -3' miRNA: 3'- -GCCgCGgaCC-GACGCGUAGG-CGGACG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 27718 | 0.68 | 0.211217 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 27426 | 0.68 | 0.205814 |
Target: 5'- cCGuCGcCCUGG--GCGCAUCCGCCgccaGCa -3' miRNA: 3'- -GCcGC-GGACCgaCGCGUAGGCGGa---CG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 14360 | 0.68 | 0.200532 |
Target: 5'- gCGGUGuCCUGGaaggcggGgGCAUCCGCgCcGCg -3' miRNA: 3'- -GCCGC-GGACCga-----CgCGUAGGCG-GaCG- -5' |
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26987 | 5' | -62.8 | NC_005809.1 | + | 22995 | 0.68 | 0.200532 |
Target: 5'- uCGGCuuucGCCUGGUcggccUGCuGC-UgCGCCUGCu -3' miRNA: 3'- -GCCG----CGGACCG-----ACG-CGuAgGCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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