miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 3' -50.1 NC_005809.1 + 29124 0.66 0.89695
Target:  5'- ----cGGUCACGCgCgCGAGGCC-GCa -3'
miRNA:   3'- cuuuaCCAGUGCG-GaGUUCUGGaUGc -5'
26988 3' -50.1 NC_005809.1 + 24549 0.66 0.884703
Target:  5'- --cGUGGUCGCGCagcgcggcgauggCGAGGCCggccACGg -3'
miRNA:   3'- cuuUACCAGUGCGga-----------GUUCUGGa---UGC- -5'
26988 3' -50.1 NC_005809.1 + 26308 0.66 0.881524
Target:  5'- cGGGUGGcCGCGCg-CGAGGCCaACGc -3'
miRNA:   3'- cUUUACCaGUGCGgaGUUCUGGaUGC- -5'
26988 3' -50.1 NC_005809.1 + 25468 0.67 0.864951
Target:  5'- --cGUGGUCAaGCCcCAAGGCCcgGCc -3'
miRNA:   3'- cuuUACCAGUgCGGaGUUCUGGa-UGc -5'
26988 3' -50.1 NC_005809.1 + 21386 0.67 0.856253
Target:  5'- -cAAUGG-CGCGCU---GGGCCUGCGc -3'
miRNA:   3'- cuUUACCaGUGCGGaguUCUGGAUGC- -5'
26988 3' -50.1 NC_005809.1 + 13895 0.67 0.847292
Target:  5'- cGAcGUGG-CGCGCCgcgcuggCGAGGCCgccgGCa -3'
miRNA:   3'- -CUuUACCaGUGCGGa------GUUCUGGa---UGc -5'
26988 3' -50.1 NC_005809.1 + 14316 0.67 0.838078
Target:  5'- uGAAcUGGcgCGCGCCUUGgcugaacugccGGGCCUGCu -3'
miRNA:   3'- -CUUuACCa-GUGCGGAGU-----------UCUGGAUGc -5'
26988 3' -50.1 NC_005809.1 + 33137 0.67 0.838078
Target:  5'- --cGUGGaCGCGaCCaacgacgcuauUCAAGACCUGCa -3'
miRNA:   3'- cuuUACCaGUGC-GG-----------AGUUCUGGAUGc -5'
26988 3' -50.1 NC_005809.1 + 8615 0.68 0.809024
Target:  5'- ---cUGGUUGCGCUUCucGGCCgcUGCGg -3'
miRNA:   3'- cuuuACCAGUGCGGAGuuCUGG--AUGC- -5'
26988 3' -50.1 NC_005809.1 + 29097 0.68 0.809024
Target:  5'- ----aGGUCAgGCCcgugCGGGACUUGCu -3'
miRNA:   3'- cuuuaCCAGUgCGGa---GUUCUGGAUGc -5'
26988 3' -50.1 NC_005809.1 + 19084 0.68 0.798908
Target:  5'- ----aGGUCACGCgauugCAGGccgGCCUGCGa -3'
miRNA:   3'- cuuuaCCAGUGCGga---GUUC---UGGAUGC- -5'
26988 3' -50.1 NC_005809.1 + 35231 0.69 0.778102
Target:  5'- ----aGGUCGaggcCGCgCUCAAGGCCaUGCGu -3'
miRNA:   3'- cuuuaCCAGU----GCG-GAGUUCUGG-AUGC- -5'
26988 3' -50.1 NC_005809.1 + 31135 0.7 0.677651
Target:  5'- ----gGuGUCGCGCCUUAucggcGACCUGCa -3'
miRNA:   3'- cuuuaC-CAGUGCGGAGUu----CUGGAUGc -5'
26988 3' -50.1 NC_005809.1 + 38309 1.1 0.002006
Target:  5'- gGAAAUGGUCACGCCUCAAGACCUACGg -3'
miRNA:   3'- -CUUUACCAGUGCGGAGUUCUGGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.