miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 5' -57.3 NC_005809.1 + 8392 0.67 0.460306
Target:  5'- cGCGCuGGCUGCGuagccagucGGCCaGgGcCGUGCg -3'
miRNA:   3'- aUGCGuUCGGCGU---------UCGG-CgCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 37239 0.67 0.460306
Target:  5'- aGCGCGAuGCCau--GCUGCGccACGUGCu -3'
miRNA:   3'- aUGCGUU-CGGcguuCGGCGC--UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 19495 0.67 0.460306
Target:  5'- gUGgGCAGGCCGCugcgaaCCGUGGucuUGUGCu -3'
miRNA:   3'- -AUgCGUUCGGCGuuc---GGCGCU---GCACG- -5'
26988 5' -57.3 NC_005809.1 + 32831 0.67 0.460306
Target:  5'- cUACaCcAGCCGCAacggcuucgccuGGCCGCaGACGgucgGCg -3'
miRNA:   3'- -AUGcGuUCGGCGU------------UCGGCG-CUGCa---CG- -5'
26988 5' -57.3 NC_005809.1 + 26827 0.67 0.460306
Target:  5'- uUugGCAGGCUGCGccGCCcCGAUGgagcggGCg -3'
miRNA:   3'- -AugCGUUCGGCGUu-CGGcGCUGCa-----CG- -5'
26988 5' -57.3 NC_005809.1 + 9362 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9170 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9050 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 8931 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9218 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9002 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 34363 0.67 0.450264
Target:  5'- cGCGCAcgaacuGGCCGCcauGUCGCuGACGaacggGCa -3'
miRNA:   3'- aUGCGU------UCGGCGuu-CGGCG-CUGCa----CG- -5'
26988 5' -57.3 NC_005809.1 + 9314 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 24555 0.67 0.444297
Target:  5'- cGCGCAgcgcggcgauggcgaGGCCGgccacgguCGGGCCGUccGGCGUGUc -3'
miRNA:   3'- aUGCGU---------------UCGGC--------GUUCGGCG--CUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 19030 0.67 0.440343
Target:  5'- gUGCGguAGCCcugGUAgcGGCCGCcGGCG-GCg -3'
miRNA:   3'- -AUGCguUCGG---CGU--UCGGCG-CUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 8123 0.67 0.430548
Target:  5'- cGCGC-GGCCgGCGuuGGuuGUGgGCGUGCg -3'
miRNA:   3'- aUGCGuUCGG-CGU--UCggCGC-UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 40202 0.67 0.430548
Target:  5'- cACGCGGGCgucugccacgUGCAGGCCgaauuGCGGCGcacGCg -3'
miRNA:   3'- aUGCGUUCG----------GCGUUCGG-----CGCUGCa--CG- -5'
26988 5' -57.3 NC_005809.1 + 41540 0.67 0.429576
Target:  5'- cAUGCu-GCCGCcGGCCGUGGCcuuccagGUGUu -3'
miRNA:   3'- aUGCGuuCGGCGuUCGGCGCUG-------CACG- -5'
26988 5' -57.3 NC_005809.1 + 27837 0.67 0.420882
Target:  5'- cGCGguGG-CGCcGGCCGCGcCGcUGCu -3'
miRNA:   3'- aUGCguUCgGCGuUCGGCGCuGC-ACG- -5'
26988 5' -57.3 NC_005809.1 + 38533 0.67 0.420882
Target:  5'- --gGCcuGCCGCucGCCGCGGcCG-GCu -3'
miRNA:   3'- augCGuuCGGCGuuCGGCGCU-GCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.