Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26989 | 5' | -58.6 | NC_005809.1 | + | 38881 | 1.11 | 0.000226 |
Target: 5'- gGGGCAGCGCGUCGCCGUGGUGGAUUCg -3' miRNA: 3'- -CCCGUCGCGCAGCGGCACCACCUAAG- -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 3821 | 0.75 | 0.130519 |
Target: 5'- uGGGCAgGCGC-UUGCCGUGGUGag-UCa -3' miRNA: 3'- -CCCGU-CGCGcAGCGGCACCACcuaAG- -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 5472 | 0.72 | 0.191149 |
Target: 5'- cGGGCGGCGagguGUUGCCGaUGGgGGGUa- -3' miRNA: 3'- -CCCGUCGCg---CAGCGGC-ACCaCCUAag -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 13926 | 0.7 | 0.248487 |
Target: 5'- aGGGCGauGuCGCGcagCGCCGUGGacUGGAUg- -3' miRNA: 3'- -CCCGU--C-GCGCa--GCGGCACC--ACCUAag -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 25090 | 0.7 | 0.282151 |
Target: 5'- -cGCAGCGCGcccggCGCCGUGGgauacagcGGGUg- -3' miRNA: 3'- ccCGUCGCGCa----GCGGCACCa-------CCUAag -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 4539 | 0.67 | 0.404292 |
Target: 5'- uGGGCGGuCGUGcCGCCGcGGaacUGGAc-- -3' miRNA: 3'- -CCCGUC-GCGCaGCGGCaCC---ACCUaag -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 41776 | 0.66 | 0.442049 |
Target: 5'- gGGcGCGGCGCGUCGCCGg--------- -3' miRNA: 3'- -CC-CGUCGCGCAGCGGCaccaccuaag -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 4105 | 0.66 | 0.460668 |
Target: 5'- uGGGCGGCGCugaauucGUCGCgGUcGUcGGcUUCg -3' miRNA: 3'- -CCCGUCGCG-------CAGCGgCAcCA-CCuAAG- -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 27766 | 0.66 | 0.46166 |
Target: 5'- aGGCAGCGC--CGCCGaGGUGcaGGUUUc -3' miRNA: 3'- cCCGUCGCGcaGCGGCaCCAC--CUAAG- -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 29002 | 0.66 | 0.46166 |
Target: 5'- uGGCgAGCGCGcguucaacaUCGCCGUGGgcaccGAgUCa -3' miRNA: 3'- cCCG-UCGCGC---------AGCGGCACCac---CUaAG- -5' |
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26989 | 5' | -58.6 | NC_005809.1 | + | 41887 | 0.66 | 0.470633 |
Target: 5'- uGGGCGGCccggccgGCGcCGCCGUaggcgccuGGUGGc--- -3' miRNA: 3'- -CCCGUCG-------CGCaGCGGCA--------CCACCuaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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