Results 21 - 40 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 28337 | 0.67 | 0.538531 |
Target: 5'- cGUGGacgacgcacuuaACCGCGCCAAGGA--AGCCGc -3' miRNA: 3'- uCACCg-----------UGGUGUGGUUCUUcgUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 10307 | 0.67 | 0.529704 |
Target: 5'- cGG-GGUGCCACuucgccaguuucGCCAGGccGUAGCCGu -3' miRNA: 3'- -UCaCCGUGGUG------------UGGUUCuuCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 40135 | 0.67 | 0.529704 |
Target: 5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3' miRNA: 3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 32418 | 0.67 | 0.529704 |
Target: 5'- --cGcGCGCCACgucuGCCAAGAcgacGGCAGCg- -3' miRNA: 3'- ucaC-CGUGGUG----UGGUUCU----UCGUCGgu -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 24485 | 0.67 | 0.529704 |
Target: 5'- -uUGGC-CUGCGCCAGGAAGUcguaggGGCUg -3' miRNA: 3'- ucACCGuGGUGUGGUUCUUCG------UCGGu -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 29847 | 0.67 | 0.526407 |
Target: 5'- --cGGCACCcaGCACCAAcGGGCcgggcgacuugaacAGCCAg -3' miRNA: 3'- ucaCCGUGG--UGUGGUUcUUCG--------------UCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 30971 | 0.67 | 0.507879 |
Target: 5'- -cUGGCACUGCugCcc--GGCGGCCAg -3' miRNA: 3'- ucACCGUGGUGugGuucuUCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 12811 | 0.67 | 0.507879 |
Target: 5'- ---cGCGCaCGCGCCuGGcAGCAGCCGa -3' miRNA: 3'- ucacCGUG-GUGUGGuUCuUCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 27428 | 0.67 | 0.507879 |
Target: 5'- --gGcGCACCGCGCCc---GGCGGCCGc -3' miRNA: 3'- ucaC-CGUGGUGUGGuucuUCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 33266 | 0.67 | 0.507879 |
Target: 5'- cGUGcGcCGCCAgguCGCCGAGGAagucaaugcGCAGCCGg -3' miRNA: 3'- uCAC-C-GUGGU---GUGGUUCUU---------CGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 37802 | 0.67 | 0.497109 |
Target: 5'- --gGGCGCagugugggcgaACGCCGAGAAcaucGCGGCCGu -3' miRNA: 3'- ucaCCGUGg----------UGUGGUUCUU----CGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 13188 | 0.67 | 0.497109 |
Target: 5'- -cUGGCcuACCGCGCCGAGuccgagggcugGGGCaaGGCCAc -3' miRNA: 3'- ucACCG--UGGUGUGGUUC-----------UUCG--UCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 19987 | 0.67 | 0.496038 |
Target: 5'- cGUGcaagaucGCaACCGCGgCGAGAAGCGGCaCAa -3' miRNA: 3'- uCAC-------CG-UGGUGUgGUUCUUCGUCG-GU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 41591 | 0.67 | 0.486444 |
Target: 5'- --cGGCACCG-GCCA---GGCGGCCAa -3' miRNA: 3'- ucaCCGUGGUgUGGUucuUCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 38387 | 0.67 | 0.486444 |
Target: 5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3' miRNA: 3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 14388 | 0.68 | 0.475887 |
Target: 5'- --aGGCGCCGCACCugcuGGgcGUGGgCAa -3' miRNA: 3'- ucaCCGUGGUGUGGu---UCuuCGUCgGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 37642 | 0.68 | 0.465446 |
Target: 5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3' miRNA: 3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 25942 | 0.68 | 0.462337 |
Target: 5'- --cGGCACCGCACCAAcAaccucuucaccaacGGCGGCg- -3' miRNA: 3'- ucaCCGUGGUGUGGUUcU--------------UCGUCGgu -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 2222 | 0.68 | 0.455126 |
Target: 5'- gGGUaGCACCACGCgCAGcAGGCGGCg- -3' miRNA: 3'- -UCAcCGUGGUGUG-GUUcUUCGUCGgu -5' |
|||||||
26990 | 3' | -55.5 | NC_005809.1 | + | 12983 | 0.68 | 0.44493 |
Target: 5'- -cUGGCAaaccgCGCGCCuGGgcGCGGCCGa -3' miRNA: 3'- ucACCGUg----GUGUGGuUCuuCGUCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home