miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26992 3' -62.4 NC_005809.1 + 39990 1.1 0.000116
Target:  5'- aACAGGGCGGCAAGCGCGCGCACGCGCu -3'
miRNA:   3'- -UGUCCCGCCGUUCGCGCGCGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 2406 0.82 0.01977
Target:  5'- uCAGGGCGGCAAGCGUagGUGUACG-GCa -3'
miRNA:   3'- uGUCCCGCCGUUCGCG--CGCGUGCgCG- -5'
26992 3' -62.4 NC_005809.1 + 38721 0.8 0.025647
Target:  5'- aGCuGGGCGGCGAG-GUGCGCAaagUGCGCu -3'
miRNA:   3'- -UGuCCCGCCGUUCgCGCGCGU---GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 33030 0.77 0.044282
Target:  5'- uGCuGGGCGGCAAGUgcaaguucccGCGUGCuguCGUGCg -3'
miRNA:   3'- -UGuCCCGCCGUUCG----------CGCGCGu--GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 25767 0.76 0.05255
Target:  5'- uGCuGGGCGGCGgcaacgauGGCcgcgauGCGCGCGgCGCGCu -3'
miRNA:   3'- -UGuCCCGCCGU--------UCG------CGCGCGU-GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 7058 0.75 0.063738
Target:  5'- cCGGGGCGGCcagguacuucaugacGccgcggccuacccacGGCGCGCcCACGCGCa -3'
miRNA:   3'- uGUCCCGCCG---------------U---------------UCGCGCGcGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 26046 0.74 0.073813
Target:  5'- aGCccGcGCGGCGGGCGCGCucCAUGCGCu -3'
miRNA:   3'- -UGucC-CGCCGUUCGCGCGc-GUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 14738 0.74 0.075918
Target:  5'- aGCGGcGCGGCcGGCGCcaccgcggGCaGCGCGCGCg -3'
miRNA:   3'- -UGUCcCGCCGuUCGCG--------CG-CGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 24419 0.74 0.080304
Target:  5'- aACAGGGCuauuucGGCAAGCuGCGCGagcCGgGCg -3'
miRNA:   3'- -UGUCCCG------CCGUUCG-CGCGCgu-GCgCG- -5'
26992 3' -62.4 NC_005809.1 + 12125 0.73 0.08493
Target:  5'- gGCAGGuuGGCGcGaCGCGC-CACGCGCu -3'
miRNA:   3'- -UGUCCcgCCGUuC-GCGCGcGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 16318 0.73 0.08981
Target:  5'- cCAGGcCGGCGGGUGCccgugccuucgGCGaCGCGCGCa -3'
miRNA:   3'- uGUCCcGCCGUUCGCG-----------CGC-GUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 32562 0.73 0.092349
Target:  5'- cCAGGGCGGgGGcCGgGCGCGCG-GCa -3'
miRNA:   3'- uGUCCCGCCgUUcGCgCGCGUGCgCG- -5'
26992 3' -62.4 NC_005809.1 + 13138 0.73 0.094955
Target:  5'- aGCAccuGGGCGcgacguGCGAGCGCGUGggcaACGCGCc -3'
miRNA:   3'- -UGU---CCCGC------CGUUCGCGCGCg---UGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 40202 0.73 0.094955
Target:  5'- cACGcGGGCGucugccacguGCAGGCcgaauuGCgGCGCACGCGCg -3'
miRNA:   3'- -UGU-CCCGC----------CGUUCG------CG-CGCGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 24773 0.72 0.100379
Target:  5'- uGCA-GGCGGaauacuGCGCGCGCuucuauccguucGCGCGCg -3'
miRNA:   3'- -UGUcCCGCCguu---CGCGCGCG------------UGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 14869 0.72 0.103199
Target:  5'- ---cGGCGGCGAGC-CGCuGCcgGCGCGCg -3'
miRNA:   3'- ugucCCGCCGUUCGcGCG-CG--UGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 5612 0.72 0.106094
Target:  5'- gGCGGGGUGcGUuucGCGCGUGgCGCgGCGCa -3'
miRNA:   3'- -UGUCCCGC-CGuu-CGCGCGC-GUG-CGCG- -5'
26992 3' -62.4 NC_005809.1 + 2570 0.72 0.106094
Target:  5'- gACA---CGGCccAGCGCGUGCGCGCGCu -3'
miRNA:   3'- -UGUcccGCCGu-UCGCGCGCGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 8663 0.72 0.115241
Target:  5'- cGCGcGGuCGGCAuuGCGUGC-CGCGCGCa -3'
miRNA:   3'- -UGUcCC-GCCGUu-CGCGCGcGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 15138 0.72 0.115241
Target:  5'- cCAGGGCcugcGGCcgccGGGCGCgguGCGCcagGCGCGCg -3'
miRNA:   3'- uGUCCCG----CCG----UUCGCG---CGCG---UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.