miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26992 3' -62.4 NC_005809.1 + 10707 0.66 0.274227
Target:  5'- -gGGGGUcuugcacGGCGAGgGCGUGC-CGCa- -3'
miRNA:   3'- ugUCCCG-------CCGUUCgCGCGCGuGCGcg -5'
26992 3' -62.4 NC_005809.1 + 9316 0.66 0.268158
Target:  5'- gACcuGGCGGCGcacgucGGCGCG-GCGgGCGg -3'
miRNA:   3'- -UGucCCGCCGU------UCGCGCgCGUgCGCg -5'
26992 3' -62.4 NC_005809.1 + 21460 0.67 0.261543
Target:  5'- -gGGGGCGGCAGGaUGUugGCcucgacCAUGCGCu -3'
miRNA:   3'- ugUCCCGCCGUUC-GCG--CGc-----GUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 37224 0.67 0.261543
Target:  5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3'
miRNA:   3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 28243 0.67 0.261543
Target:  5'- aGCAGGccCGGCAguucagccaaGGCGCGCGCcaguucagcaACGaCGUg -3'
miRNA:   3'- -UGUCCc-GCCGU----------UCGCGCGCG----------UGC-GCG- -5'
26992 3' -62.4 NC_005809.1 + 5094 0.67 0.261543
Target:  5'- aACA-GGCGGCcGGCccagcguccgGUGCgGCugGCGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG----------CGCG-CGugCGCG- -5'
26992 3' -62.4 NC_005809.1 + 7830 0.67 0.25506
Target:  5'- -gAGGcGCGGCugcaCGaugaccagGCGCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuuc-GCg-------CGCGUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 27437 0.67 0.25506
Target:  5'- cGCccGGCGGCcgcaggcccuGGCGCugguaugccaGCGCGcCGCGCa -3'
miRNA:   3'- -UGucCCGCCGu---------UCGCG----------CGCGU-GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 15397 0.67 0.25506
Target:  5'- gGCaAGGGUcgucgaGGCAucCGCGUGCGgCGCGUg -3'
miRNA:   3'- -UG-UCCCG------CCGUucGCGCGCGU-GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 4512 0.67 0.24871
Target:  5'- --cGGGCGGCGcccgugaacguGGCGUgcuggGCGguCGUGCc -3'
miRNA:   3'- uguCCCGCCGU-----------UCGCG-----CGCguGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 42391 0.67 0.248083
Target:  5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3'
miRNA:   3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5'
26992 3' -62.4 NC_005809.1 + 1364 0.67 0.242492
Target:  5'- -aAGGGaUGGUgacauaGGGCGcCGCGgcCACGCGCa -3'
miRNA:   3'- ugUCCC-GCCG------UUCGC-GCGC--GUGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 41172 0.67 0.241877
Target:  5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3'
miRNA:   3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5'
26992 3' -62.4 NC_005809.1 + 4364 0.67 0.236403
Target:  5'- gGCcGGaCGGCAGGCGgaUGCGCAgccaggcgccguCGCGCc -3'
miRNA:   3'- -UGuCCcGCCGUUCGC--GCGCGU------------GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 8211 0.67 0.236403
Target:  5'- gACAuGGCGGCcAGUucGUGCGCGgcCGUGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG--CGCGCGU--GCGCG- -5'
26992 3' -62.4 NC_005809.1 + 1749 0.67 0.236403
Target:  5'- cACcGGGCGGUcauGGCcggccuGCGC-CugGCGCg -3'
miRNA:   3'- -UGuCCCGCCGu--UCG------CGCGcGugCGCG- -5'
26992 3' -62.4 NC_005809.1 + 41887 0.67 0.236403
Target:  5'- --uGGGCGGCccggccGGCGcCGcCGUAgGCGCc -3'
miRNA:   3'- uguCCCGCCGu-----UCGC-GC-GCGUgCGCG- -5'
26992 3' -62.4 NC_005809.1 + 16935 0.67 0.236403
Target:  5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3'
miRNA:   3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5'
26992 3' -62.4 NC_005809.1 + 25070 0.67 0.230443
Target:  5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3'
miRNA:   3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5'
26992 3' -62.4 NC_005809.1 + 8143 0.68 0.22461
Target:  5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3'
miRNA:   3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.