miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26993 3' -55 NC_005809.1 + 2761 0.65 0.708695
Target:  5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3'
miRNA:   3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5'
26993 3' -55 NC_005809.1 + 9724 0.66 0.697793
Target:  5'- ---cGCCGaccgucUGCgGCCaggCGaAGCCGUUGCg -3'
miRNA:   3'- gguaCGGC------ACG-CGGa--GC-UUGGCAACG- -5'
26993 3' -55 NC_005809.1 + 37008 0.66 0.697793
Target:  5'- gCCAgcGuuG-GCGCCgUCGAuACCGUgGCg -3'
miRNA:   3'- -GGUa-CggCaCGCGG-AGCU-UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 1758 0.66 0.693414
Target:  5'- gUCAUgGCCGgccUGCGCCuggcgcgUCGGGCCGauacguucgaugauUUGCu -3'
miRNA:   3'- -GGUA-CGGC---ACGCGG-------AGCUUGGC--------------AACG- -5'
26993 3' -55 NC_005809.1 + 34806 0.66 0.686826
Target:  5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3'
miRNA:   3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5'
26993 3' -55 NC_005809.1 + 19149 0.66 0.686826
Target:  5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5'
26993 3' -55 NC_005809.1 + 28275 0.66 0.686826
Target:  5'- aCCAUGaCCGcGCGCUg-GGACaCGgcGCa -3'
miRNA:   3'- -GGUAC-GGCaCGCGGagCUUG-GCaaCG- -5'
26993 3' -55 NC_005809.1 + 41893 0.66 0.675806
Target:  5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5'
26993 3' -55 NC_005809.1 + 30296 0.66 0.675806
Target:  5'- ---cGUCGgguaGCGCCccugCGAGCCGcuUUGCg -3'
miRNA:   3'- gguaCGGCa---CGCGGa---GCUUGGC--AACG- -5'
26993 3' -55 NC_005809.1 + 36232 0.66 0.675806
Target:  5'- uUCggGCCGgGCGCUUUG-GCUGggGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGAGCuUGGCaaCG- -5'
26993 3' -55 NC_005809.1 + 34730 0.66 0.664743
Target:  5'- uUCAaGCgCGUGCGCCUgGucAUCGU-GCa -3'
miRNA:   3'- -GGUaCG-GCACGCGGAgCu-UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 15138 0.66 0.65365
Target:  5'- cCCAUGCUGgcggcggaUGCGCCcagggCGAcgGCUgauGUUGCu -3'
miRNA:   3'- -GGUACGGC--------ACGCGGa----GCU--UGG---CAACG- -5'
26993 3' -55 NC_005809.1 + 23123 0.66 0.65365
Target:  5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3'
miRNA:   3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 34381 0.66 0.65365
Target:  5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3'
miRNA:   3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5'
26993 3' -55 NC_005809.1 + 27498 0.67 0.642535
Target:  5'- -gAUGCCG-GCgGCCUCG-GCCGccaGCu -3'
miRNA:   3'- ggUACGGCaCG-CGGAGCuUGGCaa-CG- -5'
26993 3' -55 NC_005809.1 + 28665 0.67 0.642535
Target:  5'- uCgGUGCCG-GCgGCCUCGccAGCgCGgcGCg -3'
miRNA:   3'- -GgUACGGCaCG-CGGAGC--UUG-GCaaCG- -5'
26993 3' -55 NC_005809.1 + 14861 0.67 0.642535
Target:  5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3'
miRNA:   3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5'
26993 3' -55 NC_005809.1 + 33052 0.67 0.642535
Target:  5'- cCCGcgugcUGUCGUGCGCUucaUCGggUCGc-GCa -3'
miRNA:   3'- -GGU-----ACGGCACGCGG---AGCuuGGCaaCG- -5'
26993 3' -55 NC_005809.1 + 21852 0.67 0.642535
Target:  5'- ---gGCC-UGCGCCUUGcGCaGUUGCu -3'
miRNA:   3'- gguaCGGcACGCGGAGCuUGgCAACG- -5'
26993 3' -55 NC_005809.1 + 9057 0.67 0.620289
Target:  5'- gCCGUGCCGUaauUGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa-GCU--UGGCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.