miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26993 3' -55 NC_005809.1 + 10647 0.74 0.257496
Target:  5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3'
miRNA:   3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5'
26993 3' -55 NC_005809.1 + 41893 0.66 0.675806
Target:  5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5'
26993 3' -55 NC_005809.1 + 34806 0.66 0.686826
Target:  5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3'
miRNA:   3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5'
26993 3' -55 NC_005809.1 + 2761 0.65 0.708695
Target:  5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3'
miRNA:   3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5'
26993 3' -55 NC_005809.1 + 9153 0.69 0.51112
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 9201 0.69 0.51112
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 9345 0.69 0.51112
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 38312 0.68 0.554099
Target:  5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3'
miRNA:   3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5'
26993 3' -55 NC_005809.1 + 26798 0.67 0.609176
Target:  5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3'
miRNA:   3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5'
26993 3' -55 NC_005809.1 + 23123 0.66 0.65365
Target:  5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3'
miRNA:   3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 9057 0.67 0.620289
Target:  5'- gCCGUGCCGUaauUGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa-GCU--UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 8962 0.67 0.598084
Target:  5'- gCCGUGCCGUaauUGCCagCGuGGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCAc--GCGGa-GC-UUGGCAa--CG- -5'
26993 3' -55 NC_005809.1 + 9105 0.7 0.4396
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26993 3' -55 NC_005809.1 + 14861 0.67 0.642535
Target:  5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3'
miRNA:   3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5'
26993 3' -55 NC_005809.1 + 9249 0.7 0.4396
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26993 3' -55 NC_005809.1 + 8024 0.68 0.587021
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5'
26993 3' -55 NC_005809.1 + 34381 0.66 0.65365
Target:  5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3'
miRNA:   3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5'
26993 3' -55 NC_005809.1 + 19149 0.66 0.686826
Target:  5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5'
26993 3' -55 NC_005809.1 + 9009 0.69 0.51112
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26993 3' -55 NC_005809.1 + 9297 0.69 0.51112
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.