Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26993 | 5' | -54.7 | NC_005809.1 | + | 40231 | 1.08 | 0.000884 |
Target: 5'- cCAGCAACAGAUCGAGGACAGGCUGCGc -3' miRNA: 3'- -GUCGUUGUCUAGCUCCUGUCCGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 4828 | 0.66 | 0.644781 |
Target: 5'- cCGGCGACAGGUCGccGuagucgaugaccAUAGGUUGCc -3' miRNA: 3'- -GUCGUUGUCUAGCucC------------UGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 409 | 0.66 | 0.628895 |
Target: 5'- cCAGCAGCAcggcgguGAUCGucGGCcguaccuugucguuGGGCUGCu -3' miRNA: 3'- -GUCGUUGU-------CUAGCucCUG--------------UCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 19961 | 0.66 | 0.622086 |
Target: 5'- aGGCAACccAGGUUucGGGCAGGCcGCc -3' miRNA: 3'- gUCGUUG--UCUAGcuCCUGUCCGaCGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 24082 | 0.67 | 0.610747 |
Target: 5'- gCGGCGACcGcgCGGGGcACGGGCaccccgcuacaUGCGc -3' miRNA: 3'- -GUCGUUGuCuaGCUCC-UGUCCG-----------ACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 16456 | 0.67 | 0.562336 |
Target: 5'- aCGGCGucgUAGAUCGGGGGCgugacggacaggucGGGC-GCGa -3' miRNA: 3'- -GUCGUu--GUCUAGCUCCUG--------------UCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 2170 | 0.68 | 0.543462 |
Target: 5'- uGGCgAACAGuugCGAGGugAGGCUa-- -3' miRNA: 3'- gUCG-UUGUCua-GCUCCugUCCGAcgc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 28056 | 0.68 | 0.521532 |
Target: 5'- uCGGCGACGGucugcUCGAacagcGGGCAGGUggccGCGg -3' miRNA: 3'- -GUCGUUGUCu----AGCU-----CCUGUCCGa---CGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 20296 | 0.68 | 0.521532 |
Target: 5'- cCAGUAGCGGGUUGcucGGcGGCcGGUUGCGa -3' miRNA: 3'- -GUCGUUGUCUAGC---UC-CUGuCCGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 11747 | 0.68 | 0.499954 |
Target: 5'- -uGCgAACuGAUCGGcGACAGGUUGCa -3' miRNA: 3'- guCG-UUGuCUAGCUcCUGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 34335 | 0.69 | 0.489314 |
Target: 5'- cCAGCGACuucgccGA-CGAGGGCAcGGCcGCGc -3' miRNA: 3'- -GUCGUUGu-----CUaGCUCCUGU-CCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 12248 | 0.73 | 0.274201 |
Target: 5'- gCGGCAucgaACGGAUCGGcgguaguguccuGGGCGGGUUGCu -3' miRNA: 3'- -GUCGU----UGUCUAGCU------------CCUGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 5298 | 0.69 | 0.478781 |
Target: 5'- -uGCAugucugGCAGGUCGAGGccgUAGGCcGCGa -3' miRNA: 3'- guCGU------UGUCUAGCUCCu--GUCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 3804 | 0.69 | 0.478781 |
Target: 5'- gGGCAGCAugaccaggcGGUCGGGGGCGccGUUGCGa -3' miRNA: 3'- gUCGUUGU---------CUAGCUCCUGUc-CGACGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 18111 | 0.69 | 0.457034 |
Target: 5'- aAGCAGCAGGUCGucGGCgucaaugucgccgAGGCcGCGc -3' miRNA: 3'- gUCGUUGUCUAGCucCUG-------------UCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 2966 | 0.7 | 0.40846 |
Target: 5'- gAGC-ACGuGAUCGAuGACAGGUUGCu -3' miRNA: 3'- gUCGuUGU-CUAGCUcCUGUCCGACGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 23906 | 0.7 | 0.389581 |
Target: 5'- -uGUAACAGGcCGGGGGCGGGCgaccGCc -3' miRNA: 3'- guCGUUGUCUaGCUCCUGUCCGa---CGc -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 2371 | 0.74 | 0.23381 |
Target: 5'- aCGGCAACGGuUCGAGGcGCAcGGCaugGCGg -3' miRNA: 3'- -GUCGUUGUCuAGCUCC-UGU-CCGa--CGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 17830 | 0.74 | 0.227585 |
Target: 5'- aCAGCAugGG-UCGAGGccgcGCAGGC-GCGg -3' miRNA: 3'- -GUCGUugUCuAGCUCC----UGUCCGaCGC- -5' |
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26993 | 5' | -54.7 | NC_005809.1 | + | 21393 | 0.66 | 0.667428 |
Target: 5'- cCAGCAGCAGGcCGcgcaGCAGGCcGCGc -3' miRNA: 3'- -GUCGUUGUCUaGCucc-UGUCCGaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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