miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26994 5' -59.5 NC_005809.1 + 5541 0.66 0.421161
Target:  5'- aGGUUCCGCccagg-UCGCCCGCCaCGGu -3'
miRNA:   3'- -UUAGGGCGacgacaAGCGGGUGG-GCC- -5'
26994 5' -59.5 NC_005809.1 + 20220 0.66 0.417402
Target:  5'- --gCCCGCggccgGCUGUUgGCCUugggugccuugcuCCUGGg -3'
miRNA:   3'- uuaGGGCGa----CGACAAgCGGGu------------GGGCC- -5'
26994 5' -59.5 NC_005809.1 + 14863 0.66 0.410873
Target:  5'- ---gCCGCacGCUGggCGCCUuuaaguuGCCCGGc -3'
miRNA:   3'- uuagGGCGa-CGACaaGCGGG-------UGGGCC- -5'
26994 5' -59.5 NC_005809.1 + 33050 0.66 0.393474
Target:  5'- -uUCCCGCgUGCUG-UCGUgCGCUucauCGGg -3'
miRNA:   3'- uuAGGGCG-ACGACaAGCGgGUGG----GCC- -5'
26994 5' -59.5 NC_005809.1 + 38528 0.67 0.366994
Target:  5'- aAGUUCCGCccgGCUGcgcUCGaCCCGCgCGGc -3'
miRNA:   3'- -UUAGGGCGa--CGACa--AGC-GGGUGgGCC- -5'
26994 5' -59.5 NC_005809.1 + 14909 0.67 0.350035
Target:  5'- --aCCaCGgUGgaGguggCGCCCACCUGGg -3'
miRNA:   3'- uuaGG-GCgACgaCaa--GCGGGUGGGCC- -5'
26994 5' -59.5 NC_005809.1 + 12731 0.67 0.341767
Target:  5'- --gCCCGUuggUGCUGggUGCCgCGCCCa- -3'
miRNA:   3'- uuaGGGCG---ACGACaaGCGG-GUGGGcc -5'
26994 5' -59.5 NC_005809.1 + 19392 0.67 0.341767
Target:  5'- --aCCUGCUGCUG-UCGCaCCAgCaGGg -3'
miRNA:   3'- uuaGGGCGACGACaAGCG-GGUgGgCC- -5'
26994 5' -59.5 NC_005809.1 + 25095 0.68 0.310119
Target:  5'- -uUCUCGCcGCUGUUCGUgCAggcCCUGGc -3'
miRNA:   3'- uuAGGGCGaCGACAAGCGgGU---GGGCC- -5'
26994 5' -59.5 NC_005809.1 + 18265 0.69 0.280751
Target:  5'- --aCCCGCgGCUGcUCGCCgACCUc- -3'
miRNA:   3'- uuaGGGCGaCGACaAGCGGgUGGGcc -5'
26994 5' -59.5 NC_005809.1 + 3478 0.69 0.260207
Target:  5'- -uUCgCGCUGgaGUUCGaCgGCCCGGc -3'
miRNA:   3'- uuAGgGCGACgaCAAGCgGgUGGGCC- -5'
26994 5' -59.5 NC_005809.1 + 40677 1.07 0.000382
Target:  5'- aAAUCCCGCUGCUGUUCGCCCACCCGGc -3'
miRNA:   3'- -UUAGGGCGACGACAAGCGGGUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.