Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26995 | 5' | -59.4 | NC_005809.1 | + | 40828 | 1.06 | 0.000413 |
Target: 5'- gGCCGGCCAUGACCGCCCGGUGUUCAUc -3' miRNA: 3'- -CGGCCGGUACUGGCGGGCCACAAGUA- -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 35157 | 0.66 | 0.428877 |
Target: 5'- gGCCGGCCAUccGgUGCCCGGc-UUCAa -3' miRNA: 3'- -CGGCCGGUAc-UgGCGGGCCacAAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 12695 | 0.66 | 0.410065 |
Target: 5'- gGCCcGCCuUGAuaGCCUGGcUGUUCAa -3' miRNA: 3'- -CGGcCGGuACUggCGGGCC-ACAAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 4431 | 0.66 | 0.400853 |
Target: 5'- uGCCGcGCCAgggGgaaGCCGCCagCGGUGgcaccgUCAUg -3' miRNA: 3'- -CGGC-CGGUa--C---UGGCGG--GCCACa-----AGUA- -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 26514 | 0.66 | 0.391774 |
Target: 5'- aGCCGGCaucauucACCGCCaCGGUuUUCAg -3' miRNA: 3'- -CGGCCGguac---UGGCGG-GCCAcAAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 40335 | 0.67 | 0.374023 |
Target: 5'- uGCCGGCCAag---GCCCGGcGUUUAUa -3' miRNA: 3'- -CGGCCGGUacuggCGGGCCaCAAGUA- -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 6396 | 0.68 | 0.324124 |
Target: 5'- gGCCGGCCG-----GCCCGGUGUagUCGc -3' miRNA: 3'- -CGGCCGGUacuggCGGGCCACA--AGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 694 | 0.68 | 0.301098 |
Target: 5'- cGCCGGCCG-GGCCGCCCa-------- -3' miRNA: 3'- -CGGCCGGUaCUGGCGGGccacaagua -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 24576 | 0.73 | 0.152175 |
Target: 5'- gGCCGGCCAcggucgGGCCGUCCGGcGUg--- -3' miRNA: 3'- -CGGCCGGUa-----CUGGCGGGCCaCAagua -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 2660 | 0.67 | 0.38283 |
Target: 5'- --gGGCCAgcgG-UCGCCCaGGUGUUCGa -3' miRNA: 3'- cggCCGGUa--CuGGCGGG-CCACAAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 30559 | 0.67 | 0.374023 |
Target: 5'- cGCCGGCCAcGGCCGCgCUGcUGgcCGa -3' miRNA: 3'- -CGGCCGGUaCUGGCG-GGCcACaaGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 13955 | 0.68 | 0.301098 |
Target: 5'- gGCCGGCCucauCCGCgCCGGU--UCAa -3' miRNA: 3'- -CGGCCGGuacuGGCG-GGCCAcaAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 34806 | 0.7 | 0.215874 |
Target: 5'- cGCCGGCgCA-GAUCGCgCCGGUGcugCAa -3' miRNA: 3'- -CGGCCG-GUaCUGGCG-GGCCACaa-GUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 41548 | 0.83 | 0.026451 |
Target: 5'- cGCCGGCCGUGGCCuUCCaGGUGUUCGa -3' miRNA: 3'- -CGGCCGGUACUGGcGGG-CCACAAGUa -5' |
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26995 | 5' | -59.4 | NC_005809.1 | + | 41260 | 0.66 | 0.409137 |
Target: 5'- uGUCGGCCugGUGGCCGUCgcccugggcgcggCGGUGUgggCGg -3' miRNA: 3'- -CGGCCGG--UACUGGCGG-------------GCCACAa--GUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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