miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 3' -57.8 NC_005809.1 + 41444 1.07 0.000508
Target:  5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3'
miRNA:   3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 13618 0.76 0.095017
Target:  5'- uCGGCauguCGCUGCaUCAUGAguUCGAUGGCAGc -3'
miRNA:   3'- -GCCG----GCGACG-AGUACU--AGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 25164 0.76 0.100653
Target:  5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3'
miRNA:   3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5'
26996 3' -57.8 NC_005809.1 + 35253 0.75 0.116152
Target:  5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3'
miRNA:   3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5'
26996 3' -57.8 NC_005809.1 + 16148 0.74 0.141608
Target:  5'- gCGGCCGCacGCUgAUGGUgGugGGCGu -3'
miRNA:   3'- -GCCGGCGa-CGAgUACUAgCugCCGUu -5'
26996 3' -57.8 NC_005809.1 + 8628 0.74 0.154011
Target:  5'- uCGGCCGCUGCgguggCGaGGUCGcCGGCc- -3'
miRNA:   3'- -GCCGGCGACGa----GUaCUAGCuGCCGuu -5'
26996 3' -57.8 NC_005809.1 + 18795 0.73 0.167391
Target:  5'- aGGCCGCcaccuUGUUgGUGAUCuGGCGGCGc -3'
miRNA:   3'- gCCGGCG-----ACGAgUACUAG-CUGCCGUu -5'
26996 3' -57.8 NC_005809.1 + 25759 0.71 0.213945
Target:  5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3'
miRNA:   3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 4354 0.71 0.224497
Target:  5'- uGGCCGUUGCguugccggugcgCGUGAaggCGACGGCc- -3'
miRNA:   3'- gCCGGCGACGa-----------GUACUa--GCUGCCGuu -5'
26996 3' -57.8 NC_005809.1 + 1146 0.7 0.25748
Target:  5'- gCGGCCGUUugcGCUCGccGUCGAUGGUGAa -3'
miRNA:   3'- -GCCGGCGA---CGAGUacUAGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 13767 0.7 0.264261
Target:  5'- aCGGCgcgcugGCUGCUCAaGAUCGGCaaccagGGCAAg -3'
miRNA:   3'- -GCCGg-----CGACGAGUaCUAGCUG------CCGUU- -5'
26996 3' -57.8 NC_005809.1 + 19501 0.7 0.271185
Target:  5'- aGGCCGCUGCgaacCGUGGUCuugugcuCGGUGAa -3'
miRNA:   3'- gCCGGCGACGa---GUACUAGcu-----GCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 29763 0.69 0.292833
Target:  5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3'
miRNA:   3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5'
26996 3' -57.8 NC_005809.1 + 18572 0.69 0.308001
Target:  5'- aGGCCGC-GCUCGcGGU-GACGGCc- -3'
miRNA:   3'- gCCGGCGaCGAGUaCUAgCUGCCGuu -5'
26996 3' -57.8 NC_005809.1 + 34523 0.69 0.308001
Target:  5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3'
miRNA:   3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 13014 0.69 0.331864
Target:  5'- aGGCCGCgcaGCgcaGUGG-CGACGGCc- -3'
miRNA:   3'- gCCGGCGa--CGag-UACUaGCUGCCGuu -5'
26996 3' -57.8 NC_005809.1 + 25149 0.68 0.348514
Target:  5'- gGGCCaCUGCUCAaGGgcgaCGugGGCGc -3'
miRNA:   3'- gCCGGcGACGAGUaCUa---GCugCCGUu -5'
26996 3' -57.8 NC_005809.1 + 36107 0.68 0.374587
Target:  5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3'
miRNA:   3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 31372 0.68 0.374587
Target:  5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3'
miRNA:   3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5'
26996 3' -57.8 NC_005809.1 + 42195 0.67 0.383567
Target:  5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3'
miRNA:   3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.