miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26996 3' -57.8 NC_005809.1 + 25164 0.76 0.100653
Target:  5'- cCGGCC-CUcGCUCGUGGUCGGCGGg-- -3'
miRNA:   3'- -GCCGGcGA-CGAGUACUAGCUGCCguu -5'
26996 3' -57.8 NC_005809.1 + 25759 0.71 0.213945
Target:  5'- gGGCgCGCUGCUgGg---CGGCGGCAAc -3'
miRNA:   3'- gCCG-GCGACGAgUacuaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 29763 0.69 0.292833
Target:  5'- uCGGCUGCUGCcaggcgCGUGcgCGAgauuuCGGCAu -3'
miRNA:   3'- -GCCGGCGACGa-----GUACuaGCU-----GCCGUu -5'
26996 3' -57.8 NC_005809.1 + 30565 0.67 0.392688
Target:  5'- cCGGCCGCUGUagaugCGgcaGAUgGugGGCu- -3'
miRNA:   3'- -GCCGGCGACGa----GUa--CUAgCugCCGuu -5'
26996 3' -57.8 NC_005809.1 + 31085 0.66 0.439358
Target:  5'- gGuGCCGCUGCUCAcc-UCGGugcaggcCGGCGAg -3'
miRNA:   3'- gC-CGGCGACGAGUacuAGCU-------GCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 31188 0.67 0.401949
Target:  5'- gGGCCGCgcacGUUCugccugacGGUCGAgGGCGAa -3'
miRNA:   3'- gCCGGCGa---CGAGua------CUAGCUgCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 31372 0.68 0.374587
Target:  5'- aCGGCCggaaGCUGCUCAaggcguUGAacccCGACuGGCAAc -3'
miRNA:   3'- -GCCGG----CGACGAGU------ACUa---GCUG-CCGUU- -5'
26996 3' -57.8 NC_005809.1 + 32929 0.67 0.430548
Target:  5'- aCGGCUGCUGUUCGgccaGggCGAccaCGGCu- -3'
miRNA:   3'- -GCCGGCGACGAGUa---CuaGCU---GCCGuu -5'
26996 3' -57.8 NC_005809.1 + 34523 0.69 0.308001
Target:  5'- uGGgCGC-GCgUCAUGGaCGGCGGCAAg -3'
miRNA:   3'- gCCgGCGaCG-AGUACUaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 35253 0.75 0.116152
Target:  5'- cCGGCUGCUGCguucgCAgaccAUCGACGGCGc -3'
miRNA:   3'- -GCCGGCGACGa----GUac--UAGCUGCCGUu -5'
26996 3' -57.8 NC_005809.1 + 36107 0.68 0.374587
Target:  5'- gCGGCgUGCaGUUCcUGcgCGACGGCGAc -3'
miRNA:   3'- -GCCG-GCGaCGAGuACuaGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 39580 0.66 0.450264
Target:  5'- -cGCUGCUGCgcuau-UCGGCGGCAAc -3'
miRNA:   3'- gcCGGCGACGaguacuAGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 41411 0.66 0.440343
Target:  5'- aCGGCUGUccUUCAccAUCGACGGCGAg -3'
miRNA:   3'- -GCCGGCGacGAGUacUAGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 41444 1.07 0.000508
Target:  5'- aCGGCCGCUGCUCAUGAUCGACGGCAAg -3'
miRNA:   3'- -GCCGGCGACGAGUACUAGCUGCCGUU- -5'
26996 3' -57.8 NC_005809.1 + 42195 0.67 0.383567
Target:  5'- uGGCCGC-GCUCA--AUCGGCaGGCc- -3'
miRNA:   3'- gCCGGCGaCGAGUacUAGCUG-CCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.