Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26997 | 5' | -58.6 | NC_005809.1 | + | 27636 | 0.68 | 0.354991 |
Target: 5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3' miRNA: 3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 35770 | 0.66 | 0.442049 |
Target: 5'- cGCGCCGugucccuGGCUGAccaGGCgGUCAUagauucCCa -3' miRNA: 3'- -CGCGGCu------CCGACU---CCGgUAGUAgc----GG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 21104 | 0.69 | 0.327193 |
Target: 5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3' miRNA: 3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 13274 | 0.73 | 0.176361 |
Target: 5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3' miRNA: 3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 32137 | 0.67 | 0.436258 |
Target: 5'- gGCGCCauugccaagcuguugGAaaugaaaaguGGC-GAGGCCAUCGgcgCGCUg -3' miRNA: 3'- -CGCGG---------------CU----------CCGaCUCCGGUAGUa--GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 2444 | 0.67 | 0.41354 |
Target: 5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3' miRNA: 3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 17994 | 0.66 | 0.46166 |
Target: 5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3' miRNA: 3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 38315 | 0.66 | 0.491907 |
Target: 5'- aUGCCGGcGCUGAcGGCCggCAccgacuaCGCCa -3' miRNA: 3'- cGCGGCUcCGACU-CCGGuaGUa------GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 16791 | 0.75 | 0.113544 |
Target: 5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3' miRNA: 3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 15064 | 0.76 | 0.095901 |
Target: 5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3' miRNA: 3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18973 | 0.72 | 0.186102 |
Target: 5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3' miRNA: 3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 12593 | 0.73 | 0.181173 |
Target: 5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3' miRNA: 3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 13304 | 0.71 | 0.238438 |
Target: 5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3' miRNA: 3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 8639 | 0.67 | 0.41354 |
Target: 5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3' miRNA: 3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 18396 | 0.67 | 0.395176 |
Target: 5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3' miRNA: 3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 40815 | 0.67 | 0.386193 |
Target: 5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3' miRNA: 3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 13023 | 0.67 | 0.386193 |
Target: 5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3' miRNA: 3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 35785 | 0.68 | 0.377346 |
Target: 5'- uGCGCaagucaaGGcGCUGAaccaGGCCAUCgagcagGUCGCCa -3' miRNA: 3'- -CGCGg------CUcCGACU----CCGGUAG------UAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 23545 | 0.69 | 0.304032 |
Target: 5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3' miRNA: 3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5' |
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26997 | 5' | -58.6 | NC_005809.1 | + | 23948 | 0.69 | 0.304032 |
Target: 5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3' miRNA: 3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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